Analysis of interatomic Contacts of Structural Units in PDB entry:
9PX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PX5 entry

There are 3 chains in PDB entry 9PX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -347ASP 131
H
 GLN 1SER 225
L
 ASP 1CYS 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9PX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-333 -318Right-handed alpha
Helix 2
AA2
A
-308 -298Right-handed alpha
Helix 3
AA3
A
-284 -277Right-handed alpha
Helix 4
AA4
A
-268 -263Right-handed alpha
Helix 5
AA5
A
-260 -253Right-handed alpha
Helix 6
AA6
A
-219 -210Right-handed alpha
Helix 7
AA7
A
-197 -187Right-handed alpha
Helix 8
AA8
A
-165 -149Right-handed alpha
Helix 9
AA9
A
-141 -131Right-handed alpha
Helix 10
AB1
A
-122 -120Right-handed 310
Helix 11
AB2
A
-119 -112Right-handed alpha
Helix 12
AB3
A
-78 -67Right-handed alpha
Helix 13
AB4
A
-64 -53Right-handed alpha
Helix 14
AB5
A
-46 -38Right-handed alpha
Helix 15
AB6
A
-36 -23Right-handed alpha
Helix 16
AB7
A
-15 3Right-handed alpha
Helix 17
AB8
A
6 19Right-handed alpha
Helix 18
AB9
H
73 75Right-handed 310
Helix 19
AC1
H
86 90Right-handed 310
Helix 20
AC2
H
137 139Right-handed 310
Helix 21
AC3
H
166 168Right-handed 310
Helix 22
AC4
H
197 199Right-handed 310
Helix 23
AC5
L
79 83Right-handed 310
Helix 24
AC6
L
121 126Right-handed alpha
Helix 25
AC7
L
183 189Right-handed alpha
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There are 15 sheets in PDB entry 9PX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-315 -312first strand
Strand 2
A
-343 -340parallel
Strand 3
A
-291 -287parallel
Strand 4
A
-90 -84anti-parallel
Strand 5
A
-244 -239anti-parallel
Strand 6
A
-49 -48anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-126 -123first strand
Strand 2
A
-236 -232anti-parallel
Strand 3
A
-108 -105anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-183 -178first strand
Strand 2
A
-175 -168anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
117 129parallel
Strand 3
A
108 114anti-parallel
Strand 4
A
47 53anti-parallel
Strand 5
A
60 65anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
92 97anti-parallel
Strand 3
A
82 87anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 8first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
117 121parallel
Strand 3
H
91 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
117 121parallel
Strand 3
H
91 98anti-parallel
Strand 4
H
110 113anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
130 134first strand
Strand 2
H
145 155anti-parallel
Strand 3
H
186 195anti-parallel
Strand 4
H
173 175anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
141 142first strand
Strand 2
H
145 155anti-parallel
Strand 3
H
186 195anti-parallel
Strand 4
H
179 180anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
161 164first strand
Strand 2
H
205 210anti-parallel
Strand 3
H
215 220anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 139anti-parallel
Strand 3
L
173 182anti-parallel
Strand 4
L
159 163anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
153 154first strand
Strand 2
L
145 150anti-parallel
Strand 3
L
191 197anti-parallel
Strand 4
L
205 210anti-parallel
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