Analysis of interatomic Contacts of Structural Units in PDB entry:
9PXB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PXB entry

There are 4 chains in PDB entry 9PXB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 684
C
 VAL 21GLU 214
H
 GLU 1ALA 121
L
 ASP 1THR 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9PXB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 25Right-handed alpha
Helix 2
AA2
A
25 42Right-handed alpha
Helix 3
AA3
A
43 47Right-handed 310
Helix 4
AA4
A
110 132Right-handed alpha
Helix 5
AA5
A
142 146Right-handed 310
Helix 6
AA6
A
157 161Right-handed 310
Helix 7
AA7
A
173 179Right-handed 310
Helix 8
AA8
A
181 188Right-handed alpha
Helix 9
AA9
A
190 196Right-handed alpha
Helix 10
AB1
A
208 215Right-handed alpha
Helix 11
AB2
A
217 221Right-handed 310
Helix 12
AB3
A
222 227Right-handed 310
Helix 13
AB4
A
244 259Right-handed alpha
Helix 14
AB5
A
285 303Right-handed alpha
Helix 15
AB6
A
313 337Right-handed alpha
Helix 16
AB7
A
347 357Right-handed alpha
Helix 17
AB8
A
358 371Right-handed alpha
Helix 18
AB9
A
376 389Right-handed alpha
Helix 19
AC1
A
390 408Right-handed alpha
Helix 20
AC2
A
411 451Right-handed alpha
Helix 21
AC3
A
623 628Right-handed 310
Helix 22
AC4
A
631 639Right-handed alpha
Helix 23
AC5
A
662 669Right-handed alpha
Helix 24
AC6
C
22 52Right-handed alpha
Helix 25
AC7
C
62 66Right-handed 310
Helix 26
AC8
C
72 96Right-handed alpha
Helix 27
AC9
C
104 125Right-handed alpha
Helix 28
AD1
C
132 149Right-handed alpha
Helix 29
AD2
C
151 176Right-handed alpha
Helix 30
AD3
C
191 203Right-handed alpha
Helix 31
AD4
C
204 214Right-handed alpha
Helix 32
AD5
H
87 91Right-handed 310
Helix 33
AD6
L
79 83Right-handed 310
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There are 9 sheets in PDB entry 9PXB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
648 651anti-parallel
Strand 4
A
92 102parallel
Strand 5
A
234 240anti-parallel
Strand 6
A
171 172anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
648 651anti-parallel
Strand 4
A
92 102parallel
Strand 5
A
657 661parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
168 169anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
114 118parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
34 40anti-parallel
Strand 5
H
44 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
114 118parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
109 110anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
102 105parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
44 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
102 105parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
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