Analysis of interatomic Contacts of Structural Units in PDB entry:
9PXJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PXJ entry

There are 2 chains in PDB entry 9PXJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 345GLY 792
F
 ALA 2PRO 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9PXJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
360 366Right-handed alpha
Helix 2
AA2
A
377 387Right-handed alpha
Helix 3
AA3
A
447 451Right-handed 310
Helix 4
AA4
A
544 555Right-handed alpha
Helix 5
AA5
A
637 641Right-handed 310
Helix 6
AA6
A
747 751Right-handed 310
Helix 7
AA7
F
83 89Right-handed 310
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There are 10 sheets in PDB entry 9PXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 354first strand
Strand 2
A
411 419parallel
Strand 3
A
394 400anti-parallel
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There are 17 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
787 790first strand
Strand 2
A
766 774anti-parallel
Strand 3
A
754 763anti-parallel
Strand 4
A
720 731anti-parallel
Strand 5
A
698 707anti-parallel
Strand 6
A
620 629anti-parallel
Strand 7
A
599 608anti-parallel
Strand 8
A
582 591anti-parallel
Strand 9
A
557 570anti-parallel
Strand 10
A
525 538anti-parallel
Strand 11
A
506 518anti-parallel
Strand 12
A
482 493anti-parallel
Strand 13
A
465 478anti-parallel
Strand 14
A
454 461anti-parallel
Strand 15
A
436 445anti-parallel
Strand 16
A
423 432anti-parallel
Strand 17
F
246 253anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 502first strand
Strand 2
F
235 236parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 613first strand
Strand 2
A
616 617anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 5first strand
Strand 2
F
91 93anti-parallel
Strand 3
F
102 104anti-parallel
Strand 4
F
219 222anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 11first strand
Strand 2
F
55 58anti-parallel
Strand 3
F
62 65anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
16 18first strand
Strand 2
F
24 27anti-parallel
Strand 3
F
35 38anti-parallel
Strand 4
F
42 45anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
107 110first strand
Strand 2
F
213 216anti-parallel
Strand 3
F
204 208anti-parallel
Strand 4
F
123 126anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
136 138first strand
Strand 2
F
143 148anti-parallel
Strand 3
F
151 157anti-parallel
Strand 4
F
163 166anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
176 177first strand
Strand 2
F
183 186anti-parallel
Strand 3
F
191 194anti-parallel
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