Analysis of interatomic Contacts of Structural Units in PDB entry:
9PXS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PXS entry

There are 2 chains in PDB entry 9PXS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 145
A
 SER 147ILE 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 9PXS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
44 59Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
122 129Right-handed alpha
Helix 5
AA5
A
150 163Right-handed alpha
Helix 6
AA6
A
204 217Right-handed alpha
Helix 7
AA7
A
227 234Right-handed alpha
Helix 8
AA8
A
263 280Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9PXS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
4 6anti-parallel
Strand 3
A
111 118anti-parallel
Strand 4
A
86 93anti-parallel
Strand 5
A
30 38anti-parallel
Strand 6
A
41 43anti-parallel
Strand 7
A
281 282anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
167 172anti-parallel
Strand 3
A
130 136parallel
Strand 4
A
245 252parallel
Strand 5
A
236 241anti-parallel
Strand 6
A
183 187anti-parallel
Strand 7
A
192 194anti-parallel
Strand 8
A
221 223parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
167 172anti-parallel
Strand 3
A
130 136parallel
Strand 4
A
245 252parallel
Strand 5
A
255 256anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il