Analysis of interatomic Contacts of Structural Units in PDB entry:
9PXT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PXT entry

There is 1 chain in PDB entry 9PXT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 36ALA 924
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9PXT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 81Right-handed 310
Helix 2
AA2
A
84 88Right-handed 310
Helix 3
AA3
A
116 136Right-handed alpha
Helix 4
AA4
A
149 162Right-handed alpha
Helix 5
AA5
A
171 176Right-handed 310
Helix 6
AA6
A
177 188Right-handed alpha
Helix 7
AA7
A
199 203Right-handed 310
Helix 8
AA8
A
212 217Right-handed alpha
Helix 9
AA9
A
217 231Right-handed alpha
Helix 10
AB1
A
245 250Right-handed 310
Helix 11
AB2
A
261 275Right-handed alpha
Helix 12
AB3
A
286 289Right-handed alpha
Helix 13
AB4
A
316 323Right-handed alpha
Helix 14
AB5
A
329 336Right-handed alpha
Helix 15
AB6
A
337 340Right-handed 310
Helix 16
AB7
A
362 370Right-handed alpha
Helix 17
AB8
A
374 382Right-handed alpha
Helix 18
AB9
A
389 406Right-handed alpha
Helix 19
AC1
A
424 440Right-handed alpha
Helix 20
AC2
A
480 492Right-handed alpha
Helix 21
AC3
A
505 515Right-handed alpha
Helix 22
AC4
A
527 532Right-handed alpha
Helix 23
AC5
A
534 544Right-handed alpha
Helix 24
AC6
A
557 563Right-handed alpha
Helix 25
AC7
A
571 575Right-handed 310
Helix 26
AC8
A
601 611Right-handed alpha
Helix 27
AC9
A
614 619Right-handed alpha
Helix 28
AD1
A
647 653Right-handed alpha
Helix 29
AD2
A
655 661Right-handed alpha
Helix 30
AD3
A
673 678Right-handed alpha
Helix 31
AD4
A
697 711Right-handed alpha
Helix 32
AD5
A
719 726Right-handed alpha
Helix 33
AD6
A
744 748Right-handed 310
Helix 34
AD7
A
749 755Right-handed alpha
Helix 35
AD8
A
830 837Right-handed alpha
Helix 36
AD9
A
896 900Right-handed 310
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There are 9 sheets in PDB entry 9PXT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
62 65anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
97 100anti-parallel
Strand 3
A
565 566anti-parallel
Strand 4
A
548 552parallel
Strand 5
A
520 524parallel
Strand 6
A
140 143parallel
Strand 7
A
169 170parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 256first strand
Strand 2
A
236 241parallel
Strand 3
A
205 209parallel
Strand 4
A
412 415parallel
Strand 5
A
448 451parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
290 295anti-parallel
Strand 3
A
790 794parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
A
345 348anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 472first strand
Strand 2
A
476 477anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 580first strand
Strand 2
A
586 589anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
868 870first strand
Strand 2
A
861 863anti-parallel
Strand 3
A
917 922anti-parallel
Strand 4
A
810 813anti-parallel
Strand 5
A
885 887parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
841 843first strand
Strand 2
A
872 874parallel
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