Analysis of interatomic Contacts of Structural Units in PDB entry:
9PYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PYM entry

There are 2 chains in PDB entry 9PYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 29ALA 634
B
 GLN 1SER 515
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9PYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 36Right-handed alpha
Helix 2
AA2
A
37 62Right-handed alpha
Helix 3
AA3
A
74 97Right-handed alpha
Helix 4
AA4
A
111 147Right-handed alpha
Helix 5
AA5
A
160 162Right-handed 310
Helix 6
AA6
A
163 188Right-handed alpha
Helix 7
AA7
A
188 209Right-handed alpha
Helix 8
AA8
A
213 229Right-handed alpha
Helix 9
AA9
A
231 247Right-handed alpha
Helix 10
AB1
A
253 262Right-handed alpha
Helix 11
AB2
A
266 268Right-handed 310
Helix 12
AB3
A
269 283Right-handed alpha
Helix 13
AB4
A
286 299Right-handed alpha
Helix 14
AB5
A
303 318Right-handed alpha
Helix 15
AB6
A
322 342Right-handed alpha
Helix 16
AB7
A
344 357Right-handed alpha
Helix 17
AB8
A
357 362Right-handed alpha
Helix 18
AB9
A
365 375Right-handed alpha
Helix 19
AC1
A
378 386Right-handed alpha
Helix 20
AC2
A
386 409Right-handed alpha
Helix 21
AC3
A
418 429Right-handed alpha
Helix 22
AC4
A
429 445Right-handed alpha
Helix 23
AC5
A
449 467Right-handed alpha
Helix 24
AC6
A
475 508Right-handed alpha
Helix 25
AC7
A
509 522Right-handed alpha
Helix 26
AC8
A
524 541Right-handed alpha
Helix 27
AC9
A
544 563Right-handed alpha
Helix 28
AD1
A
566 580Right-handed alpha
Helix 29
AD2
A
581 584Right-handed 310
Helix 30
AD3
A
590 599Right-handed alpha
Helix 31
AD4
A
601 626Right-handed alpha
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There are 3 sheets in PDB entry 9PYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
409 414anti-parallel
Strand 3
B
466 470anti-parallel
Strand 4
B
457 461anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 448first strand
Strand 2
B
438 440anti-parallel
Strand 3
B
422 428anti-parallel
Strand 4
B
481 487anti-parallel
Strand 5
B
504 505anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
493 494first strand
Strand 2
B
499 500anti-parallel
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