Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PZB entry

There are 16 chains in PDB entry 9PZB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 42	VAL 710
B	VAL 35	ASP 276
D	ALA 3	LEU 111
E	VAL 2	SER 122
F	GLN 1	SER 116
G	ASP 1	LYS 107
H	GLN 1	SER 126
I	ASP 127	LYS 239
J	GLN 1	SER 118
K	VAL 3	LEU 115
L	TYR 2	LEU 107
M	GLN 3	SER 118
N	GLY 2	SER 117
O	ASP 1	LYS 107
P	GLN 1	SER 121
Q	VAL 1	LYS 106

There are 61 helices in PDB entry 9PZB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	98	Right-handed 310
Helix 2	AA2	A	99	107	Right-handed alpha
Helix 3	AA3	A	114	122	Right-handed alpha
Helix 4	AA4	A	263	266	Right-handed 310
Helix 5	AA5	A	289	294	Right-handed 310
Helix 6	AA6	A	308	316	Right-handed alpha
Helix 7	AA7	A	316	327	Right-handed alpha
Helix 8	AA8	A	334	352	Right-handed alpha
Helix 9	AA9	A	353	358	Right-handed alpha
Helix 10	AB1	A	362	385	Right-handed alpha
Helix 11	AB2	A	387	391	Right-handed 310
Helix 12	AB3	A	396	408	Right-handed alpha
Helix 13	AB4	A	415	429	Right-handed alpha
Helix 14	AB5	A	431	435	Right-handed 310
Helix 15	AB6	A	436	454	Right-handed alpha
Helix 16	AB7	A	460	474	Right-handed alpha
Helix 17	AB8	A	480	494	Right-handed alpha
Helix 18	AB9	A	496	506	Right-handed alpha
Helix 19	AC1	A	507	509	Right-handed 310
Helix 20	AC2	A	514	519	Right-handed 310
Helix 21	AC3	A	520	524	Right-handed 310
Helix 22	AC4	A	531	536	Right-handed alpha
Helix 23	AC5	A	537	539	Right-handed 310
Helix 24	AC6	A	547	559	Right-handed alpha
Helix 25	AC7	A	644	648	Right-handed 310
Helix 26	AC8	A	671	680	Right-handed alpha
Helix 27	AC9	A	681	684	Right-handed 310
Helix 28	AD1	B	46	56	Right-handed alpha
Helix 29	AD2	B	66	70	Right-handed 310
Helix 30	AD3	B	83	87	Right-handed 310
Helix 31	AD4	B	102	113	Right-handed alpha
Helix 32	AD5	B	117	128	Right-handed alpha
Helix 33	AD6	B	132	137	Right-handed alpha
Helix 34	AD7	B	163	167	Right-handed 310
Helix 35	AD8	B	215	217	Right-handed 310
Helix 36	AD9	B	218	236	Right-handed alpha
Helix 37	AE1	B	241	252	Right-handed alpha
Helix 38	AE2	B	271	276	Right-handed alpha
Helix 39	AE3	D	81	85	Right-handed 310
Helix 40	AE4	E	28	30	Right-handed 310
Helix 41	AE5	E	62	65	Right-handed 310
Helix 42	AE6	E	87	91	Right-handed 310
Helix 43	AE7	F	28	32	Right-handed 310
Helix 44	AE8	F	87	91	Right-handed 310
Helix 45	AE9	G	79	83	Right-handed 310
Helix 46	AF1	H	28	32	Right-handed 310
Helix 47	AF2	H	62	65	Right-handed 310
Helix 48	AF3	H	87	91	Right-handed 310
Helix 49	AF4	I	211	215	Right-handed 310
Helix 50	AF5	J	65	67	Right-handed 310
Helix 51	AF6	J	88	92	Right-handed 310
Helix 52	AF7	K	87	91	Right-handed 310
Helix 53	AF8	L	78	82	Right-handed 310
Helix 54	AF9	N	28	32	Right-handed 310
Helix 55	AG1	N	62	65	Right-handed 310
Helix 56	AG2	N	87	91	Right-handed 310
Helix 57	AG3	O	79	83	Right-handed 310
Helix 58	AG4	P	28	32	Right-handed 310
Helix 59	AG5	P	61	66	Right-handed alpha
Helix 60	AG6	P	87	91	Right-handed 310
Helix 61	AG7	Q	77	81	Right-handed 310

There are 45 sheets in PDB entry 9PZB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	69	72	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	86	92	anti-parallel
Strand 3	A	76	83	anti-parallel
Strand 4	B	178	184	parallel
Strand 5	B	188	197	anti-parallel
Strand 6	B	202	211	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	268	271	parallel
Strand 3	A	276	280	anti-parallel
Strand 4	A	246	251	anti-parallel
Strand 5	A	233	240	anti-parallel
Strand 6	A	223	230	anti-parallel
Strand 7	A	207	217	anti-parallel
Strand 8	A	193	197	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	184	first strand
Strand 2	A	360	361	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	578	581	first strand
Strand 2	A	587	592	anti-parallel
Strand 3	A	614	619	anti-parallel
Strand 4	A	600	602	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	638	first strand
Strand 2	A	703	705	parallel
Strand 3	A	692	697	anti-parallel
Strand 4	A	652	658	anti-parallel
Strand 5	A	662	669	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	155	first strand
Strand 2	B	158	162	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	106	110	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	36	40	anti-parallel
Strand 5	D	47	50	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	106	110	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	100	102	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	64	69	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	117	121	parallel
Strand 3	E	92	101	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	5	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	111	115	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	111	115	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	103	107	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	7	first strand
Strand 2	G	19	24	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	33	38	anti-parallel
Strand 5	G	45	49	anti-parallel
Strand 6	G	53	54	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	97	98	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	70	73	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	121	125	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	121	125	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	114	117	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	130	133	first strand
Strand 2	I	145	151	anti-parallel
Strand 3	I	202	207	anti-parallel
Strand 4	I	194	199	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	138	first strand
Strand 2	I	234	237	parallel
Strand 3	I	217	222	anti-parallel
Strand 4	I	165	170	anti-parallel
Strand 5	I	177	180	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	156	157	first strand
Strand 2	I	162	163	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	79	84	anti-parallel
Strand 4	J	69	70	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	79	84	anti-parallel
Strand 4	J	73	74	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	113	117	parallel
Strand 3	J	93	101	anti-parallel
Strand 4	J	35	41	anti-parallel
Strand 5	J	47	53	anti-parallel
Strand 6	J	59	61	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	113	117	parallel
Strand 3	J	93	101	anti-parallel
Strand 4	J	105	109	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	5	first strand
Strand 2	K	18	24	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	12	first strand
Strand 2	K	110	114	parallel
Strand 3	K	93	100	anti-parallel
Strand 4	K	35	40	anti-parallel
Strand 5	K	47	54	anti-parallel
Strand 6	K	57	60	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	12	first strand
Strand 2	K	110	114	parallel
Strand 3	K	93	100	anti-parallel
Strand 4	K	103	106	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	69	74	anti-parallel
Strand 4	L	61	66	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	87	anti-parallel
Strand 4	L	34	37	anti-parallel
Strand 5	L	44	47	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	18	24	anti-parallel
Strand 3	M	77	82	anti-parallel
Strand 4	M	67	72	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	12	first strand
Strand 2	M	113	117	parallel
Strand 3	M	91	99	anti-parallel
Strand 4	M	32	40	anti-parallel
Strand 5	M	46	52	anti-parallel
Strand 6	M	57	59	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	12	first strand
Strand 2	M	113	117	parallel
Strand 3	M	91	99	anti-parallel
Strand 4	M	108	109	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	6	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	112	116	parallel
Strand 3	N	92	99	anti-parallel
Strand 4	N	33	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	112	116	parallel
Strand 3	N	92	99	anti-parallel
Strand 4	N	105	108	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4	7	first strand
Strand 2	O	19	25	anti-parallel
Strand 3	O	70	75	anti-parallel
Strand 4	O	62	67	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	13	first strand
Strand 2	O	102	106	parallel
Strand 3	O	85	90	anti-parallel
Strand 4	O	33	38	anti-parallel
Strand 5	O	45	48	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	6	first strand
Strand 2	P	18	25	anti-parallel
Strand 3	P	78	83	anti-parallel
Strand 4	P	68	72	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	12	first strand
Strand 2	P	116	120	parallel
Strand 3	P	92	99	anti-parallel
Strand 4	P	33	39	anti-parallel
Strand 5	P	45	51	anti-parallel
Strand 6	P	58	60	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	2	5	first strand
Strand 2	Q	17	27	anti-parallel
Strand 3	Q	60	73	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	8	11	first strand
Strand 2	Q	101	105	parallel
Strand 3	Q	82	88	anti-parallel
Strand 4	Q	31	36	anti-parallel
Strand 5	Q	43	47	anti-parallel
Strand 6	Q	51	52	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PZB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZB