Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PZC entry

There are 16 chains in PDB entry 9PZC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 42	VAL 710
B	GLU 41	GLN 273
C	GLN 1	LEU 106
D	GLN 1	SER 112
E	GLN 1	SER 112
F	GLU 1	LYS 107
G	GLN 1	SER 112
H	GLN 1	SER 112
I	ILE 2	LYS 107
J	ASP 1	LYS 107
K	GLN 1	SER 112
L	ALA 3	LEU 106
M	ASP 1	LYS 107
N	GLN 3	SER 112
O	GLU 1	SER 110
P	ASP 1	ARG 107

There are 56 helices in PDB entry 9PZC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	95	98	Right-handed 310
Helix 2	AA2	A	99	107	Right-handed alpha
Helix 3	AA3	A	114	122	Right-handed alpha
Helix 4	AA4	A	264	266	Right-handed 310
Helix 5	AA5	A	289	294	Right-handed 310
Helix 6	AA6	A	298	303	Right-handed alpha
Helix 7	AA7	A	308	316	Right-handed alpha
Helix 8	AA8	A	316	328	Right-handed alpha
Helix 9	AA9	A	329	332	Right-handed 310
Helix 10	AB1	A	334	352	Right-handed alpha
Helix 11	AB2	A	353	359	Right-handed 310
Helix 12	AB3	A	363	384	Right-handed alpha
Helix 13	AB4	A	396	409	Right-handed alpha
Helix 14	AB5	A	415	429	Right-handed alpha
Helix 15	AB6	A	431	435	Right-handed 310
Helix 16	AB7	A	436	454	Right-handed alpha
Helix 17	AB8	A	460	474	Right-handed alpha
Helix 18	AB9	A	475	477	Right-handed 310
Helix 19	AC1	A	480	494	Right-handed alpha
Helix 20	AC2	A	496	507	Right-handed alpha
Helix 21	AC3	A	514	519	Right-handed 310
Helix 22	AC4	A	520	524	Right-handed 310
Helix 23	AC5	A	531	537	Right-handed alpha
Helix 24	AC6	A	540	544	Right-handed 310
Helix 25	AC7	A	547	559	Right-handed alpha
Helix 26	AC8	A	671	680	Right-handed alpha
Helix 27	AC9	A	681	684	Right-handed 310
Helix 28	AD1	A	707	710	Right-handed 310
Helix 29	AD2	B	46	57	Right-handed alpha
Helix 30	AD3	B	66	70	Right-handed 310
Helix 31	AD4	B	83	87	Right-handed 310
Helix 32	AD5	B	102	113	Right-handed alpha
Helix 33	AD6	B	117	128	Right-handed alpha
Helix 34	AD7	B	132	137	Right-handed alpha
Helix 35	AD8	B	163	167	Right-handed 310
Helix 36	AD9	B	172	176	Right-handed 310
Helix 37	AE1	B	215	217	Right-handed 310
Helix 38	AE2	B	218	236	Right-handed alpha
Helix 39	AE3	B	241	252	Right-handed alpha
Helix 40	AE4	C	79	83	Right-handed 310
Helix 41	AE5	D	61	64	Right-handed 310
Helix 42	AE6	D	83	87	Right-handed 310
Helix 43	AE7	E	28	32	Right-handed 310
Helix 44	AE8	E	61	64	Right-handed 310
Helix 45	AE9	E	83	87	Right-handed 310
Helix 46	AF1	F	79	83	Right-handed 310
Helix 47	AF2	G	28	32	Right-handed 310
Helix 48	AF3	G	83	87	Right-handed 310
Helix 49	AF4	G	96	99	Right-handed 310
Helix 50	AF5	H	61	65	Right-handed 310
Helix 51	AF6	H	83	87	Right-handed 310
Helix 52	AF7	J	79	83	Right-handed 310
Helix 53	AF8	K	83	87	Right-handed 310
Helix 54	AF9	L	79	83	Right-handed 310
Helix 55	AG1	M	79	83	Right-handed 310
Helix 56	AG2	P	79	83	Right-handed 310

There are 49 sheets in PDB entry 9PZC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	69	72	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	86	93	anti-parallel
Strand 3	A	75	83	anti-parallel
Strand 4	B	178	184	parallel
Strand 5	B	188	197	anti-parallel
Strand 6	B	202	211	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	268	271	parallel
Strand 3	A	276	280	anti-parallel
Strand 4	A	246	251	anti-parallel
Strand 5	A	233	240	anti-parallel
Strand 6	A	223	229	anti-parallel
Strand 7	A	212	217	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	361	362	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	197	first strand
Strand 2	A	207	209	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	581	first strand
Strand 2	A	587	592	anti-parallel
Strand 3	A	614	619	anti-parallel
Strand 4	A	600	603	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	638	first strand
Strand 2	A	703	705	parallel
Strand 3	A	693	697	anti-parallel
Strand 4	A	652	658	anti-parallel
Strand 5	A	662	669	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	643	first strand
Strand 2	H	100	100	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	155	first strand
Strand 2	B	158	162	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	84	91	anti-parallel
Strand 4	C	34	38	anti-parallel
Strand 5	C	45	48	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	84	91	anti-parallel
Strand 4	C	96	98	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	24	first strand
Strand 2	C	70	75	anti-parallel
Strand 3	C	62	67	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	100	103	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	20	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	89	95	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	89	95	anti-parallel
Strand 4	E	100	103	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	97	98	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	107	111	parallel
Strand 3	G	88	94	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	57	58	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	107	111	parallel
Strand 3	G	88	94	anti-parallel
Strand 4	G	102	103	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	22	25	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	20	first strand
Strand 2	H	77	82	anti-parallel
Strand 3	H	67	72	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	66	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	84	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	49	anti-parallel
Strand 6	I	53	54	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	70	75	anti-parallel
Strand 4	J	62	67	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	102	106	parallel
Strand 3	J	84	90	anti-parallel
Strand 4	J	33	38	anti-parallel
Strand 5	J	45	49	anti-parallel
Strand 6	J	53	54	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	77	82	anti-parallel
Strand 4	K	67	72	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	107	111	parallel
Strand 3	K	88	97	anti-parallel
Strand 4	K	35	40	anti-parallel
Strand 5	K	44	51	anti-parallel
Strand 6	K	57	59	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	107	111	parallel
Strand 3	K	88	97	anti-parallel
Strand 4	K	100	103	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	67	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	102	105	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	45	50	anti-parallel
Strand 6	M	53	54	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	102	105	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	97	98	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	6	first strand
Strand 2	N	17	24	anti-parallel
Strand 3	N	77	82	anti-parallel
Strand 4	N	67	72	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	109	110	parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	57	59	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	32	39	anti-parallel
Strand 4	N	89	97	anti-parallel
Strand 5	N	102	103	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	3	7	first strand
Strand 2	O	18	25	anti-parallel
Strand 3	O	77	82	anti-parallel
Strand 4	O	67	72	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	57	59	first strand
Strand 2	O	45	51	anti-parallel
Strand 3	O	34	39	anti-parallel
Strand 4	O	88	94	anti-parallel
Strand 5	O	102	103	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	57	59	first strand
Strand 2	O	45	51	anti-parallel
Strand 3	O	34	39	anti-parallel
Strand 4	O	88	94	anti-parallel
Strand 5	O	107	109	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	4	7	first strand
Strand 2	P	19	29	anti-parallel
Strand 3	P	62	75	anti-parallel

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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	13	first strand
Strand 2	P	102	106	parallel
Strand 3	P	84	90	anti-parallel
Strand 4	P	33	38	anti-parallel
Strand 5	P	45	50	anti-parallel
Strand 6	P	53	54	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	13	first strand
Strand 2	P	102	106	parallel
Strand 3	P	84	90	anti-parallel
Strand 4	P	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PZC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZC