Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PZE entry

There are 2 chains in PDB entry 9PZE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8HIS 275
B
 LYS 8HIS 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9PZE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 21Right-handed alpha
Helix 2
AA2
A
30 45Right-handed alpha
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
73 83Right-handed alpha
Helix 5
AA5
A
84 94Right-handed alpha
Helix 6
AA6
A
121 125Right-handed 310
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
154 159Right-handed 310
Helix 9
AA9
A
175 177Right-handed 310
Helix 10
AB1
A
234 238Right-handed 310
Helix 11
AB2
A
240 242Right-handed 310
Helix 12
AB3
A
243 248Right-handed alpha
Helix 13
AB4
B
10 21Right-handed alpha
Helix 14
AB5
B
30 45Right-handed alpha
Helix 15
AB6
B
68 72Right-handed 310
Helix 16
AB7
B
73 83Right-handed alpha
Helix 17
AB8
B
84 94Right-handed alpha
Helix 18
AB9
B
121 125Right-handed 310
Helix 19
AC1
B
143 147Right-handed 310
Helix 20
AC2
B
154 159Right-handed 310
Helix 21
AC3
B
175 177Right-handed 310
Helix 22
AC4
B
234 238Right-handed 310
Helix 23
AC5
B
240 242Right-handed 310
Helix 24
AC6
B
243 249Right-handed alpha
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There are 6 sheets in PDB entry 9PZE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
189 193anti-parallel
Strand 3
A
132 138anti-parallel
Strand 4
A
209 217anti-parallel
Strand 5
A
99 108anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
198 201anti-parallel
Strand 3
A
150 152anti-parallel
Strand 4
A
179 180anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
222 223anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
189 193anti-parallel
Strand 3
B
132 138anti-parallel
Strand 4
B
209 217anti-parallel
Strand 5
B
99 108anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 119first strand
Strand 2
B
198 201anti-parallel
Strand 3
B
150 152anti-parallel
Strand 4
B
179 180anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
222 223anti-parallel
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