Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PZG entry

There are 25 chains in PDB entry 9PZG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 1	G 1401
A	C 1403	G 1517
A	C 1520	A 1534
B	MET 8	SER 225
C	GLY 1	ILE 206
D	ALA 1	LYS 205
E	GLU 9	LYS 158
F	MET 1	SER 100
G	ARG 2	ALA 151
H	SER 1	ALA 129
I	ASN 3	ARG 129
J	ARG 5	LEU 102
K	ARG 12	VAL 128
L	ALA 1	ALA 123
M	ALA 1	PRO 114
N	ALA 1	TRP 100
O	SER 1	ARG 88
P	MET 1	ALA 82
Q	LYS 3	VAL 82
R	GLU 19	HIS 73
S	ARG 2	ARG 80
T	ASN 2	ALA 86
U	PHE 36	LYS 53
V	GLN 11	GLY 286
W	GLN 11	GLY 286

There are111 helices in PDB entry 9PZG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	23	27	Right-handed 310
Helix 2	AA2	B	42	44	Right-handed 310
Helix 3	AA3	B	45	62	Right-handed alpha
Helix 4	AA4	B	72	87	Right-handed alpha
Helix 5	AA5	B	102	121	Right-handed alpha
Helix 6	AA6	B	130	146	Right-handed alpha
Helix 7	AA7	B	168	179	Right-handed alpha
Helix 8	AA8	B	205	222	Right-handed alpha
Helix 9	AA9	C	5	10	Right-handed alpha
Helix 10	AB1	C	11	13	Right-handed 310
Helix 11	AB2	C	27	42	Right-handed alpha
Helix 12	AB3	C	71	77	Right-handed alpha
Helix 13	AB4	C	80	95	Right-handed alpha
Helix 14	AB5	C	111	125	Right-handed alpha
Helix 15	AB6	C	129	143	Right-handed alpha
Helix 16	AB7	D	8	15	Right-handed alpha
Helix 17	AB8	D	23	27	Right-handed 310
Helix 18	AB9	D	48	65	Right-handed alpha
Helix 19	AC1	D	67	81	Right-handed alpha
Helix 20	AC2	D	84	95	Right-handed alpha
Helix 21	AC3	D	96	105	Right-handed alpha
Helix 22	AC4	D	109	119	Right-handed alpha
Helix 23	AC5	D	153	161	Right-handed alpha
Helix 24	AC6	D	195	204	Right-handed alpha
Helix 25	AC7	E	54	69	Right-handed alpha
Helix 26	AC8	E	108	117	Right-handed alpha
Helix 27	AC9	E	131	145	Right-handed alpha
Helix 28	AD1	E	148	155	Right-handed alpha
Helix 29	AD2	F	12	16	Right-handed 310
Helix 30	AD3	F	17	31	Right-handed alpha
Helix 31	AD4	F	67	81	Right-handed alpha
Helix 32	AD5	G	19	28	Right-handed alpha
Helix 33	AD6	G	34	53	Right-handed alpha
Helix 34	AD7	G	59	63	Right-handed 310
Helix 35	AD8	G	65	69	Right-handed 310
Helix 36	AD9	G	91	96	Right-handed alpha
Helix 37	AE1	G	96	101	Right-handed alpha
Helix 38	AE2	G	117	125	Right-handed alpha
Helix 39	AE3	G	126	129	Right-handed 310
Helix 40	AE4	G	134	144	Right-handed 310
Helix 41	AE5	H	4	19	Right-handed alpha
Helix 42	AE6	H	29	42	Right-handed alpha
Helix 43	AE7	H	87	91	Right-handed 310
Helix 44	AE8	H	112	119	Right-handed alpha
Helix 45	AE9	I	33	38	Right-handed alpha
Helix 46	AF1	I	45	47	Right-handed 310
Helix 47	AF2	I	48	54	Right-handed alpha
Helix 48	AF3	I	70	86	Right-handed alpha
Helix 49	AF4	I	92	100	Right-handed alpha
Helix 50	AF5	J	14	25	Right-handed alpha
Helix 51	AF6	J	26	30	Right-handed 310
Helix 52	AF7	K	53	57	Right-handed 310
Helix 53	AF8	K	58	74	Right-handed alpha
Helix 54	AF9	K	75	77	Right-handed 310
Helix 55	AG1	K	92	102	Right-handed alpha
Helix 56	AG2	L	2	9	Right-handed alpha
Helix 57	AG3	L	112	116	Right-handed 310
Helix 58	AG4	M	13	19	Right-handed alpha
Helix 59	AG5	M	28	37	Right-handed alpha
Helix 60	AG6	M	49	62	Right-handed alpha
Helix 61	AG7	M	64	74	Right-handed alpha
Helix 62	AG8	M	74	79	Right-handed alpha
Helix 63	AG9	M	84	93	Right-handed alpha
Helix 64	AH1	N	14	19	Right-handed 310
Helix 65	AH2	N	27	32	Right-handed alpha
Helix 66	AH3	N	44	50	Right-handed 310
Helix 67	AH4	N	55	59	Right-handed 310
Helix 68	AH5	N	81	90	Right-handed 310
Helix 69	AH6	O	3	15	Right-handed alpha
Helix 70	AH7	O	23	46	Right-handed alpha
Helix 71	AH8	O	48	73	Right-handed alpha
Helix 72	AH9	O	73	85	Right-handed alpha
Helix 73	AI1	P	53	64	Right-handed alpha
Helix 74	AI2	P	68	82	Right-handed alpha
Helix 75	AI3	R	25	32	Right-handed 310
Helix 76	AI4	R	40	45	Right-handed alpha
Helix 77	AI5	R	49	64	Right-handed alpha
Helix 78	AI6	S	11	16	Right-handed alpha
Helix 79	AI7	S	17	25	Right-handed alpha
Helix 80	AI8	S	40	44	Right-handed 310
Helix 81	AI9	S	69	74	Right-handed alpha
Helix 82	AJ1	T	3	41	Right-handed alpha
Helix 83	AJ2	T	42	63	Right-handed alpha
Helix 84	AJ3	T	67	86	Right-handed alpha
Helix 85	AJ4	U	38	47	Right-handed alpha
Helix 86	AJ5	U	48	50	Right-handed 310
Helix 87	AJ6	V	23	27	Right-handed 310
Helix 88	AJ7	V	28	38	Right-handed alpha
Helix 89	AJ8	V	45	56	Right-handed alpha
Helix 90	AJ9	V	73	84	Right-handed alpha
Helix 91	AK1	V	102	112	Right-handed alpha
Helix 92	AK2	V	123	133	Right-handed alpha
Helix 93	AK3	V	148	159	Right-handed alpha
Helix 94	AK4	V	174	187	Right-handed alpha
Helix 95	AK5	V	210	220	Right-handed alpha
Helix 96	AK6	V	221	225	Right-handed 310
Helix 97	AK7	V	243	257	Right-handed alpha
Helix 98	AK8	V	258	271	Right-handed alpha
Helix 99	AK9	V	273	286	Right-handed alpha
Helix 100	AL1	W	28	37	Right-handed alpha
Helix 101	AL2	W	45	56	Right-handed alpha
Helix 102	AL3	W	69	83	Right-handed alpha
Helix 103	AL4	W	102	112	Right-handed alpha
Helix 104	AL5	W	123	131	Right-handed alpha
Helix 105	AL6	W	148	159	Right-handed alpha
Helix 106	AL7	W	174	187	Right-handed alpha
Helix 107	AL8	W	210	219	Right-handed alpha
Helix 108	AL9	W	220	225	Right-handed 310
Helix 109	AM1	W	243	257	Right-handed alpha
Helix 110	AM2	W	258	271	Right-handed alpha
Helix 111	AM3	W	273	286	Right-handed alpha

There are 27 sheets in PDB entry 9PZG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	37	40	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	66	69	parallel
Strand 3	B	159	161	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	55	first strand
Strand 2	C	66	69	anti-parallel
Strand 3	C	101	104	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	152	first strand
Strand 2	C	194	202	anti-parallel
Strand 3	C	181	183	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	152	first strand
Strand 2	C	194	202	anti-parallel
Strand 3	C	186	189	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	123	124	anti-parallel
Strand 3	D	140	143	anti-parallel
Strand 4	D	178	181	anti-parallel
Strand 5	D	170	173	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	16	first strand
Strand 2	E	35	39	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	23	first strand
Strand 2	E	28	32	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	45	first strand
Strand 2	E	71	72	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	91	97	anti-parallel
Strand 3	E	122	126	anti-parallel
Strand 4	E	104	105	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	46	first strand
Strand 2	F	56	61	anti-parallel
Strand 3	F	6	10	anti-parallel
Strand 4	F	84	89	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	73	first strand
Strand 2	G	88	89	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	79	first strand
Strand 2	G	82	84	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	27	first strand
Strand 2	H	57	61	anti-parallel
Strand 3	H	47	51	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	73	76	first strand
Strand 2	H	122	129	anti-parallel
Strand 3	H	85	86	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	73	76	first strand
Strand 2	H	122	129	anti-parallel
Strand 3	H	100	105	anti-parallel
Strand 4	H	108	111	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	7	first strand
Strand 2	I	18	20	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	28	29	first strand
Strand 2	I	63	64	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	40	45	first strand
Strand 2	K	29	34	anti-parallel
Strand 3	K	17	24	anti-parallel
Strand 4	K	80	86	parallel
Strand 5	K	105	111	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	31	first strand
Strand 2	L	79	81	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	35	39	first strand
Strand 2	L	49	55	anti-parallel
Strand 3	L	61	65	anti-parallel
Strand 4	L	94	95	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	2	3	first strand
Strand 2	P	17	23	anti-parallel
Strand 3	P	6	8	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	2	3	first strand
Strand 2	P	17	23	anti-parallel
Strand 3	P	34	39	anti-parallel
Strand 4	P	50	51	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	7	13	first strand
Strand 2	Q	19	29	anti-parallel
Strand 3	Q	36	46	anti-parallel
Strand 4	Q	70	79	parallel
Strand 5	Q	57	67	anti-parallel
Strand 6	Q	7	13	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	62	64	first strand
Strand 2	V	40	43	parallel
Strand 3	V	87	89	parallel
Strand 4	V	13	16	parallel
Strand 5	V	115	118	parallel

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There are 10 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	204	209	first strand
Strand 2	V	191	196	anti-parallel
Strand 3	V	227	232	anti-parallel
Strand 4	V	165	171	anti-parallel
Strand 5	V	139	144	parallel
Strand 6	W	139	144	anti-parallel
Strand 7	W	165	171	parallel
Strand 8	W	227	232	anti-parallel
Strand 9	W	191	196	anti-parallel
Strand 10	W	204	209	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	61	64	first strand
Strand 2	W	40	43	parallel
Strand 3	W	87	90	parallel
Strand 4	W	14	16	parallel
Strand 5	W	116	118	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PZG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZG