Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PZK entry

There are 8 chains in PDB entry 9PZK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 4	SER 285
B	GLY 5	TYR 265
C	MET 1	ASN 287
D	SER 4	MET 266
E	LYS 3	SER 285
F	GLY 5	TYR 265
G	MET 1	PHE 290
H	SER 4	MET 266

There are111 helices in PDB entry 9PZK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	28	41	Right-handed alpha
Helix 3	AA3	A	51	65	Right-handed alpha
Helix 4	AA4	A	85	101	Right-handed alpha
Helix 5	AA5	A	123	135	Right-handed alpha
Helix 6	AA6	A	135	152	Right-handed alpha
Helix 7	AA7	A	163	167	Right-handed 310
Helix 8	AA8	A	175	196	Right-handed alpha
Helix 9	AA9	A	197	199	Right-handed 310
Helix 10	AB1	A	216	221	Right-handed alpha
Helix 11	AB2	A	224	233	Right-handed alpha
Helix 12	AB3	A	241	246	Right-handed alpha
Helix 13	AB4	A	246	255	Right-handed alpha
Helix 14	AB5	A	256	259	Right-handed 310
Helix 15	AB6	B	15	28	Right-handed alpha
Helix 16	AB7	B	37	52	Right-handed alpha
Helix 17	AB8	B	69	84	Right-handed alpha
Helix 18	AB9	B	102	106	Right-handed 310
Helix 19	AC1	B	107	119	Right-handed alpha
Helix 20	AC2	B	119	136	Right-handed alpha
Helix 21	AC3	B	149	151	Right-handed 310
Helix 22	AC4	B	159	181	Right-handed alpha
Helix 23	AC5	B	198	205	Right-handed alpha
Helix 24	AC6	B	205	212	Right-handed alpha
Helix 25	AC7	B	212	217	Right-handed alpha
Helix 26	AC8	B	229	238	Right-handed alpha
Helix 27	AC9	B	239	242	Right-handed 310
Helix 28	AD1	B	254	258	Right-handed 310
Helix 29	AD2	B	261	265	Right-handed 310
Helix 30	AD3	C	11	15	Right-handed 310
Helix 31	AD4	C	28	41	Right-handed alpha
Helix 32	AD5	C	51	65	Right-handed alpha
Helix 33	AD6	C	85	101	Right-handed alpha
Helix 34	AD7	C	123	135	Right-handed alpha
Helix 35	AD8	C	135	152	Right-handed alpha
Helix 36	AD9	C	163	167	Right-handed 310
Helix 37	AE1	C	175	197	Right-handed alpha
Helix 38	AE2	C	216	221	Right-handed alpha
Helix 39	AE3	C	224	233	Right-handed alpha
Helix 40	AE4	C	246	255	Right-handed alpha
Helix 41	AE5	C	256	259	Right-handed 310
Helix 42	AE6	D	15	28	Right-handed alpha
Helix 43	AE7	D	37	53	Right-handed alpha
Helix 44	AE8	D	69	84	Right-handed alpha
Helix 45	AE9	D	102	106	Right-handed 310
Helix 46	AF1	D	107	119	Right-handed alpha
Helix 47	AF2	D	119	136	Right-handed alpha
Helix 48	AF3	D	149	151	Right-handed 310
Helix 49	AF4	D	159	181	Right-handed alpha
Helix 50	AF5	D	198	205	Right-handed alpha
Helix 51	AF6	D	205	212	Right-handed alpha
Helix 52	AF7	D	212	217	Right-handed alpha
Helix 53	AF8	D	229	237	Right-handed alpha
Helix 54	AF9	D	238	242	Right-handed 310
Helix 55	AG1	D	254	258	Right-handed 310
Helix 56	AG2	D	261	266	Right-handed 310
Helix 57	AG3	E	11	15	Right-handed 310
Helix 58	AG4	E	28	41	Right-handed alpha
Helix 59	AG5	E	51	65	Right-handed alpha
Helix 60	AG6	E	85	99	Right-handed alpha
Helix 61	AG7	E	123	135	Right-handed alpha
Helix 62	AG8	E	135	152	Right-handed alpha
Helix 63	AG9	E	163	167	Right-handed 310
Helix 64	AH1	E	175	197	Right-handed alpha
Helix 65	AH2	E	216	221	Right-handed alpha
Helix 66	AH3	E	224	233	Right-handed alpha
Helix 67	AH4	E	246	255	Right-handed alpha
Helix 68	AH5	E	256	259	Right-handed 310
Helix 69	AH6	F	15	28	Right-handed alpha
Helix 70	AH7	F	37	52	Right-handed alpha
Helix 71	AH8	F	69	84	Right-handed alpha
Helix 72	AH9	F	102	106	Right-handed 310
Helix 73	AI1	F	107	119	Right-handed alpha
Helix 74	AI2	F	119	136	Right-handed alpha
Helix 75	AI3	F	149	151	Right-handed 310
Helix 76	AI4	F	159	181	Right-handed alpha
Helix 77	AI5	F	198	205	Right-handed alpha
Helix 78	AI6	F	205	212	Right-handed alpha
Helix 79	AI7	F	212	217	Right-handed alpha
Helix 80	AI8	F	229	238	Right-handed alpha
Helix 81	AI9	F	239	242	Right-handed 310
Helix 82	AJ1	F	254	258	Right-handed 310
Helix 83	AJ2	F	261	265	Right-handed 310
Helix 84	AJ3	G	11	15	Right-handed 310
Helix 85	AJ4	G	29	41	Right-handed alpha
Helix 86	AJ5	G	51	65	Right-handed alpha
Helix 87	AJ6	G	85	101	Right-handed alpha
Helix 88	AJ7	G	123	135	Right-handed alpha
Helix 89	AJ8	G	135	152	Right-handed alpha
Helix 90	AJ9	G	163	167	Right-handed 310
Helix 91	AK1	G	175	196	Right-handed alpha
Helix 92	AK2	G	197	199	Right-handed 310
Helix 93	AK3	G	225	233	Right-handed alpha
Helix 94	AK4	G	242	246	Right-handed alpha
Helix 95	AK5	G	246	255	Right-handed alpha
Helix 96	AK6	G	256	259	Right-handed 310
Helix 97	AK7	H	15	28	Right-handed alpha
Helix 98	AK8	H	37	52	Right-handed alpha
Helix 99	AK9	H	69	84	Right-handed alpha
Helix 100	AL1	H	102	106	Right-handed 310
Helix 101	AL2	H	107	119	Right-handed alpha
Helix 102	AL3	H	119	136	Right-handed alpha
Helix 103	AL4	H	149	151	Right-handed 310
Helix 104	AL5	H	159	181	Right-handed alpha
Helix 105	AL6	H	198	205	Right-handed alpha
Helix 106	AL7	H	205	212	Right-handed alpha
Helix 107	AL8	H	212	217	Right-handed alpha
Helix 108	AL9	H	229	238	Right-handed alpha
Helix 109	AM1	H	239	242	Right-handed 310
Helix 110	AM2	H	254	258	Right-handed 310
Helix 111	AM3	H	261	266	Right-handed 310

There are 8 sheets in PDB entry 9PZK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	79	first strand
Strand 2	A	44	49	parallel
Strand 3	A	20	24	parallel
Strand 4	A	105	108	parallel
Strand 5	A	156	161	parallel
Strand 6	A	201	208	parallel
Strand 7	A	265	268	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	31	36	parallel
Strand 3	B	7	11	parallel
Strand 4	B	89	92	parallel
Strand 5	B	140	147	parallel
Strand 6	B	185	192	parallel
Strand 7	B	247	251	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	79	first strand
Strand 2	C	44	49	parallel
Strand 3	C	20	24	parallel
Strand 4	C	105	108	parallel
Strand 5	C	156	161	parallel
Strand 6	C	201	208	parallel
Strand 7	C	265	268	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	62	first strand
Strand 2	D	31	36	parallel
Strand 3	D	7	11	parallel
Strand 4	D	89	92	parallel
Strand 5	D	140	147	parallel
Strand 6	D	185	192	parallel
Strand 7	D	248	251	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	79	first strand
Strand 2	E	44	49	parallel
Strand 3	E	20	24	parallel
Strand 4	E	105	108	parallel
Strand 5	E	156	161	parallel
Strand 6	E	201	208	parallel
Strand 7	E	265	268	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	62	first strand
Strand 2	F	31	36	parallel
Strand 3	F	7	11	parallel
Strand 4	F	89	92	parallel
Strand 5	F	140	147	parallel
Strand 6	F	185	192	parallel
Strand 7	F	247	251	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	79	first strand
Strand 2	G	44	49	parallel
Strand 3	G	20	24	parallel
Strand 4	G	105	108	parallel
Strand 5	G	156	161	parallel
Strand 6	G	201	208	parallel
Strand 7	G	265	268	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	62	first strand
Strand 2	H	31	36	parallel
Strand 3	H	7	11	parallel
Strand 4	H	89	92	parallel
Strand 5	H	140	147	parallel
Strand 6	H	185	192	parallel
Strand 7	H	248	251	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PZK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZK