Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PZL entry

There are 4 chains in PDB entry 9PZL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ASN 873
B	ALA 2	ASN 873
C	ALA 2	ASN 873
D	ALA 2	ASN 873

There are173 helices in PDB entry 9PZL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	11	Right-handed 310
Helix 2	AA2	A	15	20	Right-handed alpha
Helix 3	AA3	A	20	32	Right-handed alpha
Helix 4	AA4	A	43	53	Right-handed alpha
Helix 5	AA5	A	58	77	Right-handed alpha
Helix 6	AA6	A	112	123	Right-handed alpha
Helix 7	AA7	A	125	144	Right-handed alpha
Helix 8	AA8	A	148	156	Right-handed alpha
Helix 9	AA9	A	158	163	Right-handed alpha
Helix 10	AB1	A	172	191	Right-handed alpha
Helix 11	AB2	A	201	214	Right-handed alpha
Helix 12	AB3	A	217	227	Right-handed alpha
Helix 13	AB4	A	278	283	Right-handed alpha
Helix 14	AB5	A	291	298	Right-handed alpha
Helix 15	AB6	A	298	317	Right-handed alpha
Helix 16	AB7	A	342	357	Right-handed alpha
Helix 17	AB8	A	360	367	Right-handed alpha
Helix 18	AB9	A	369	371	Right-handed 310
Helix 19	AC1	A	372	377	Right-handed alpha
Helix 20	AC2	A	382	389	Right-handed alpha
Helix 21	AC3	A	410	421	Right-handed alpha
Helix 22	AC4	A	435	441	Right-handed alpha
Helix 23	AC5	A	454	464	Right-handed alpha
Helix 24	AC6	A	518	532	Right-handed alpha
Helix 25	AC7	A	542	552	Right-handed alpha
Helix 26	AC8	A	563	568	Right-handed alpha
Helix 27	AC9	A	568	580	Right-handed alpha
Helix 28	AD1	A	583	593	Right-handed alpha
Helix 29	AD2	A	593	609	Right-handed alpha
Helix 30	AD3	A	622	626	Right-handed 310
Helix 31	AD4	A	630	639	Right-handed alpha
Helix 32	AD5	A	644	655	Right-handed alpha
Helix 33	AD6	A	666	673	Right-handed alpha
Helix 34	AD7	A	673	695	Right-handed alpha
Helix 35	AD8	A	710	732	Right-handed alpha
Helix 36	AD9	A	746	752	Right-handed alpha
Helix 37	AE1	A	752	760	Right-handed alpha
Helix 38	AE2	A	766	775	Right-handed alpha
Helix 39	AE3	A	782	792	Right-handed alpha
Helix 40	AE4	A	807	821	Right-handed alpha
Helix 41	AE5	A	837	848	Right-handed alpha
Helix 42	AE6	A	855	857	Right-handed 310
Helix 43	AE7	A	858	872	Right-handed alpha
Helix 44	AE8	B	9	11	Right-handed 310
Helix 45	AE9	B	12	14	Right-handed 310
Helix 46	AF1	B	15	20	Right-handed alpha
Helix 47	AF2	B	21	32	Right-handed alpha
Helix 48	AF3	B	43	53	Right-handed alpha
Helix 49	AF4	B	58	77	Right-handed alpha
Helix 50	AF5	B	114	124	Right-handed alpha
Helix 51	AF6	B	125	144	Right-handed alpha
Helix 52	AF7	B	148	163	Right-handed alpha
Helix 53	AF8	B	167	171	Right-handed 310
Helix 54	AF9	B	172	191	Right-handed alpha
Helix 55	AG1	B	199	215	Right-handed alpha
Helix 56	AG2	B	217	227	Right-handed alpha
Helix 57	AG3	B	277	283	Right-handed alpha
Helix 58	AG4	B	291	298	Right-handed alpha
Helix 59	AG5	B	298	317	Right-handed alpha
Helix 60	AG6	B	342	357	Right-handed alpha
Helix 61	AG7	B	360	368	Right-handed alpha
Helix 62	AG8	B	369	378	Right-handed 310
Helix 63	AG9	B	382	387	Right-handed alpha
Helix 64	AH1	B	410	419	Right-handed alpha
Helix 65	AH2	B	435	442	Right-handed alpha
Helix 66	AH3	B	454	464	Right-handed alpha
Helix 67	AH4	B	518	532	Right-handed alpha
Helix 68	AH5	B	542	553	Right-handed alpha
Helix 69	AH6	B	563	568	Right-handed alpha
Helix 70	AH7	B	568	580	Right-handed alpha
Helix 71	AH8	B	583	593	Right-handed alpha
Helix 72	AH9	B	594	610	Right-handed alpha
Helix 73	AI1	B	622	627	Right-handed 310
Helix 74	AI2	B	630	642	Right-handed alpha
Helix 75	AI3	B	644	656	Right-handed alpha
Helix 76	AI4	B	659	663	Right-handed 310
Helix 77	AI5	B	666	673	Right-handed alpha
Helix 78	AI6	B	673	696	Right-handed alpha
Helix 79	AI7	B	710	733	Right-handed alpha
Helix 80	AI8	B	746	752	Right-handed alpha
Helix 81	AI9	B	752	757	Right-handed alpha
Helix 82	AJ1	B	766	776	Right-handed alpha
Helix 83	AJ2	B	778	791	Right-handed alpha
Helix 84	AJ3	B	807	823	Right-handed alpha
Helix 85	AJ4	B	833	836	Right-handed 310
Helix 86	AJ5	B	837	847	Right-handed alpha
Helix 87	AJ6	B	855	857	Right-handed 310
Helix 88	AJ7	B	858	872	Right-handed alpha
Helix 89	AJ8	C	12	14	Right-handed 310
Helix 90	AJ9	C	15	31	Right-handed alpha
Helix 91	AK1	C	43	53	Right-handed alpha
Helix 92	AK2	C	58	77	Right-handed alpha
Helix 93	AK3	C	112	124	Right-handed alpha
Helix 94	AK4	C	125	144	Right-handed alpha
Helix 95	AK5	C	149	163	Right-handed alpha
Helix 96	AK6	C	172	191	Right-handed alpha
Helix 97	AK7	C	199	215	Right-handed alpha
Helix 98	AK8	C	217	227	Right-handed alpha
Helix 99	AK9	C	277	283	Right-handed alpha
Helix 100	AL1	C	291	298	Right-handed alpha
Helix 101	AL2	C	298	317	Right-handed alpha
Helix 102	AL3	C	342	356	Right-handed alpha
Helix 103	AL4	C	360	368	Right-handed alpha
Helix 104	AL5	C	370	378	Right-handed 310
Helix 105	AL6	C	382	388	Right-handed alpha
Helix 106	AL7	C	410	421	Right-handed alpha
Helix 107	AL8	C	432	434	Right-handed 310
Helix 108	AL9	C	435	442	Right-handed alpha
Helix 109	AM1	C	454	464	Right-handed alpha
Helix 110	AM2	C	518	530	Right-handed alpha
Helix 111	AM3	C	542	551	Right-handed alpha
Helix 112	AM4	C	563	568	Right-handed alpha
Helix 113	AM5	C	568	580	Right-handed alpha
Helix 114	AM6	C	583	610	Right-handed alpha
Helix 115	AM7	C	622	626	Right-handed 310
Helix 116	AM8	C	630	640	Right-handed alpha
Helix 117	AM9	C	646	654	Right-handed alpha
Helix 118	AN1	C	659	663	Right-handed 310
Helix 119	AN2	C	666	673	Right-handed alpha
Helix 120	AN3	C	673	696	Right-handed alpha
Helix 121	AN4	C	710	732	Right-handed alpha
Helix 122	AN5	C	746	752	Right-handed alpha
Helix 123	AN6	C	752	760	Right-handed alpha
Helix 124	AN7	C	768	775	Right-handed alpha
Helix 125	AN8	C	782	792	Right-handed alpha
Helix 126	AN9	C	807	823	Right-handed alpha
Helix 127	AO1	C	837	848	Right-handed alpha
Helix 128	AO2	C	855	857	Right-handed 310
Helix 129	AO3	C	858	872	Right-handed alpha
Helix 130	AO4	D	9	11	Right-handed 310
Helix 131	AO5	D	12	14	Right-handed 310
Helix 132	AO6	D	15	32	Right-handed alpha
Helix 133	AO7	D	43	53	Right-handed alpha
Helix 134	AO8	D	58	77	Right-handed alpha
Helix 135	AO9	D	112	124	Right-handed alpha
Helix 136	AP1	D	125	145	Right-handed alpha
Helix 137	AP2	D	148	162	Right-handed alpha
Helix 138	AP3	D	172	190	Right-handed alpha
Helix 139	AP4	D	199	213	Right-handed alpha
Helix 140	AP5	D	214	216	Right-handed 310
Helix 141	AP6	D	217	227	Right-handed alpha
Helix 142	AP7	D	278	283	Right-handed alpha
Helix 143	AP8	D	290	298	Right-handed alpha
Helix 144	AP9	D	298	317	Right-handed alpha
Helix 145	AQ1	D	342	356	Right-handed alpha
Helix 146	AQ2	D	360	368	Right-handed alpha
Helix 147	AQ3	D	382	388	Right-handed alpha
Helix 148	AQ4	D	410	421	Right-handed alpha
Helix 149	AQ5	D	432	434	Right-handed 310
Helix 150	AQ6	D	435	442	Right-handed alpha
Helix 151	AQ7	D	454	463	Right-handed alpha
Helix 152	AQ8	D	519	532	Right-handed alpha
Helix 153	AQ9	D	542	552	Right-handed alpha
Helix 154	AR1	D	563	568	Right-handed alpha
Helix 155	AR2	D	568	580	Right-handed alpha
Helix 156	AR3	D	584	592	Right-handed alpha
Helix 157	AR4	D	593	610	Right-handed alpha
Helix 158	AR5	D	622	626	Right-handed 310
Helix 159	AR6	D	630	641	Right-handed alpha
Helix 160	AR7	D	644	650	Right-handed alpha
Helix 161	AR8	D	659	663	Right-handed 310
Helix 162	AR9	D	666	673	Right-handed alpha
Helix 163	AS1	D	673	696	Right-handed alpha
Helix 164	AS2	D	710	732	Right-handed alpha
Helix 165	AS3	D	746	752	Right-handed alpha
Helix 166	AS4	D	752	757	Right-handed alpha
Helix 167	AS5	D	767	776	Right-handed alpha
Helix 168	AS6	D	782	792	Right-handed alpha
Helix 169	AS7	D	806	823	Right-handed alpha
Helix 170	AS8	D	832	836	Right-handed 310
Helix 171	AS9	D	837	848	Right-handed alpha
Helix 172	AT1	D	855	857	Right-handed 310
Helix 173	AT2	D	858	873	Right-handed alpha

There are 27 sheets in PDB entry 9PZL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	39	42	anti-parallel
Strand 3	A	237	241	anti-parallel
Strand 4	A	89	93	anti-parallel
Strand 5	A	105	109	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	266	274	anti-parallel
Strand 3	A	252	259	anti-parallel
Strand 4	A	321	327	anti-parallel
Strand 5	A	330	335	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	512	513	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	399	first strand
Strand 2	A	466	469	anti-parallel
Strand 3	A	442	449	parallel
Strand 4	A	424	430	parallel
Strand 5	A	402	408	parallel
Strand 6	A	495	499	anti-parallel
Strand 7	A	505	507	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	482	485	anti-parallel
Strand 3	A	488	491	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	538	first strand
Strand 2	A	557	560	parallel
Strand 3	A	614	617	parallel
Strand 4	A	702	705	parallel
Strand 5	A	739	743	parallel
Strand 6	A	762	765	parallel
Strand 7	A	827	830	parallel
Strand 8	A	851	854	parallel
Strand 9	A	535	538	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	39	42	anti-parallel
Strand 3	B	237	241	anti-parallel
Strand 4	B	89	92	anti-parallel
Strand 5	B	106	109	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	86	87	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	290	first strand
Strand 2	B	266	274	anti-parallel
Strand 3	B	252	259	anti-parallel
Strand 4	B	320	326	anti-parallel
Strand 5	B	331	338	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	381	first strand
Strand 2	B	512	513	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	394	first strand
Strand 2	B	504	507	anti-parallel
Strand 3	B	495	499	anti-parallel
Strand 4	B	402	408	anti-parallel
Strand 5	B	424	430	parallel
Strand 6	B	444	449	parallel
Strand 7	B	466	469	parallel
Strand 8	B	396	399	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	477	first strand
Strand 2	B	482	485	anti-parallel
Strand 3	B	488	491	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	538	first strand
Strand 2	B	556	561	parallel
Strand 3	B	614	617	parallel
Strand 4	B	702	705	parallel
Strand 5	B	739	743	parallel
Strand 6	B	762	765	parallel
Strand 7	B	827	831	parallel
Strand 8	B	851	854	parallel
Strand 9	B	535	538	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	39	42	anti-parallel
Strand 3	C	235	241	anti-parallel
Strand 4	C	89	95	anti-parallel
Strand 5	C	106	109	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	80	first strand
Strand 2	C	86	87	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	269	274	anti-parallel
Strand 3	C	252	257	anti-parallel
Strand 4	C	321	327	anti-parallel
Strand 5	C	330	337	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	381	first strand
Strand 2	C	512	513	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	394	first strand
Strand 2	C	504	507	anti-parallel
Strand 3	C	495	498	anti-parallel
Strand 4	C	405	408	anti-parallel
Strand 5	C	424	428	parallel
Strand 6	C	444	447	parallel
Strand 7	C	466	469	parallel
Strand 8	C	396	399	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	477	first strand
Strand 2	C	482	485	anti-parallel
Strand 3	C	488	491	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	538	first strand
Strand 2	C	851	854	parallel
Strand 3	C	829	831	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	615	617	first strand
Strand 2	C	702	708	parallel
Strand 3	C	739	744	parallel
Strand 4	C	763	765	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	39	42	anti-parallel
Strand 3	D	237	241	anti-parallel
Strand 4	D	89	93	anti-parallel
Strand 5	D	106	109	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	274	first strand
Strand 2	D	252	259	anti-parallel
Strand 3	D	321	327	anti-parallel
Strand 4	D	330	335	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	381	first strand
Strand 2	D	512	513	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	390	394	first strand
Strand 2	D	504	507	anti-parallel
Strand 3	D	496	499	anti-parallel
Strand 4	D	402	408	anti-parallel
Strand 5	D	424	428	parallel
Strand 6	D	444	447	parallel
Strand 7	D	466	469	parallel
Strand 8	D	396	399	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	477	first strand
Strand 2	D	482	485	anti-parallel
Strand 3	D	488	491	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	702	704	first strand
Strand 2	D	614	617	parallel
Strand 3	D	557	560	parallel
Strand 4	D	535	539	parallel
Strand 5	D	851	854	parallel
Strand 6	D	829	831	parallel
Strand 7	D	765	766	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PZL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZL