Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PZM entry

There are 7 chains in PDB entry 9PZM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 26	ALA 160
C	LEU 165	LEU 423
E	ALA 181	VAL 551
F	MET 1	LEU 328
G	MET 1	PHE 267
H	GLU 66	ALA 180
I	TRP 10	THR 319

There are109 helices in PDB entry 9PZM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	26	30	Right-handed 310
Helix 2	AA2	B	37	46	Right-handed alpha
Helix 3	AA3	B	53	85	Right-handed alpha
Helix 4	AA4	B	85	96	Right-handed alpha
Helix 5	AA5	B	96	106	Right-handed alpha
Helix 6	AA6	B	106	112	Right-handed alpha
Helix 7	AA7	B	117	134	Right-handed alpha
Helix 8	AA8	B	135	138	Right-handed 310
Helix 9	AA9	B	143	155	Right-handed alpha
Helix 10	AB1	C	166	178	Right-handed alpha
Helix 11	AB2	C	185	190	Right-handed alpha
Helix 12	AB3	C	191	193	Right-handed 310
Helix 13	AB4	C	200	224	Right-handed alpha
Helix 14	AB5	C	225	227	Right-handed 310
Helix 15	AB6	C	234	239	Right-handed alpha
Helix 16	AB7	C	243	248	Right-handed 310
Helix 17	AB8	C	249	257	Right-handed alpha
Helix 18	AB9	C	272	276	Right-handed 310
Helix 19	AC1	C	277	281	Right-handed 310
Helix 20	AC2	C	286	294	Right-handed alpha
Helix 21	AC3	C	294	309	Right-handed alpha
Helix 22	AC4	C	320	347	Right-handed alpha
Helix 23	AC5	C	349	356	Right-handed alpha
Helix 24	AC6	C	361	367	Right-handed alpha
Helix 25	AC7	C	384	399	Right-handed alpha
Helix 26	AC8	C	400	402	Right-handed 310
Helix 27	AC9	C	404	411	Right-handed alpha
Helix 28	AD1	C	415	420	Right-handed alpha
Helix 29	AD2	E	182	185	Right-handed 310
Helix 30	AD3	E	186	196	Right-handed alpha
Helix 31	AD4	E	204	209	Right-handed alpha
Helix 32	AD5	E	213	217	Right-handed 310
Helix 33	AD6	E	218	223	Right-handed alpha
Helix 34	AD7	E	228	242	Right-handed alpha
Helix 35	AD8	E	246	260	Right-handed alpha
Helix 36	AD9	E	261	264	Right-handed 310
Helix 37	AE1	E	266	272	Right-handed alpha
Helix 38	AE2	E	273	276	Right-handed 310
Helix 39	AE3	E	280	287	Right-handed alpha
Helix 40	AE4	E	290	303	Right-handed alpha
Helix 41	AE5	E	305	312	Right-handed alpha
Helix 42	AE6	E	316	321	Right-handed alpha
Helix 43	AE7	E	324	343	Right-handed alpha
Helix 44	AE8	E	348	362	Right-handed alpha
Helix 45	AE9	E	363	376	Right-handed alpha
Helix 46	AF1	E	380	386	Right-handed alpha
Helix 47	AF2	E	387	398	Right-handed alpha
Helix 48	AF3	E	402	422	Right-handed alpha
Helix 49	AF4	E	431	436	Right-handed alpha
Helix 50	AF5	E	438	459	Right-handed alpha
Helix 51	AF6	E	461	471	Right-handed alpha
Helix 52	AF7	E	480	485	Right-handed alpha
Helix 53	AF8	E	485	490	Right-handed alpha
Helix 54	AF9	E	490	495	Right-handed alpha
Helix 55	AG1	E	496	498	Right-handed 310
Helix 56	AG2	E	499	510	Right-handed alpha
Helix 57	AG3	E	530	534	Right-handed 310
Helix 58	AG4	E	542	550	Right-handed alpha
Helix 59	AG5	F	2	11	Right-handed alpha
Helix 60	AG6	F	11	24	Right-handed alpha
Helix 61	AG7	F	26	37	Right-handed alpha
Helix 62	AG8	F	38	49	Right-handed alpha
Helix 63	AG9	F	56	65	Right-handed alpha
Helix 64	AH1	F	68	82	Right-handed alpha
Helix 65	AH2	F	86	92	Right-handed alpha
Helix 66	AH3	F	93	95	Right-handed 310
Helix 67	AH4	F	96	105	Right-handed alpha
Helix 68	AH5	F	106	108	Right-handed 310
Helix 69	AH6	F	109	118	Right-handed alpha
Helix 70	AH7	F	125	128	Right-handed 310
Helix 71	AH8	F	129	140	Right-handed alpha
Helix 72	AH9	F	143	151	Right-handed alpha
Helix 73	AI1	F	153	161	Right-handed alpha
Helix 74	AI2	F	164	166	Right-handed 310
Helix 75	AI3	F	167	211	Right-handed alpha
Helix 76	AI4	F	214	232	Right-handed alpha
Helix 77	AI5	F	247	268	Right-handed alpha
Helix 78	AI6	F	274	281	Right-handed alpha
Helix 79	AI7	F	284	300	Right-handed alpha
Helix 80	AI8	F	301	315	Right-handed alpha
Helix 81	AI9	F	316	323	Right-handed alpha
Helix 82	AJ1	G	3	13	Right-handed alpha
Helix 83	AJ2	G	13	18	Right-handed alpha
Helix 84	AJ3	G	21	26	Right-handed alpha
Helix 85	AJ4	G	26	34	Right-handed alpha
Helix 86	AJ5	G	34	42	Right-handed alpha
Helix 87	AJ6	G	51	54	Right-handed 310
Helix 88	AJ7	G	55	60	Right-handed alpha
Helix 89	AJ8	G	60	66	Right-handed alpha
Helix 90	AJ9	G	66	73	Right-handed alpha
Helix 91	AK1	G	73	79	Right-handed alpha
Helix 92	AK2	G	86	91	Right-handed alpha
Helix 93	AK3	G	94	108	Right-handed alpha
Helix 94	AK4	G	109	121	Right-handed alpha
Helix 95	AK5	G	121	151	Right-handed alpha
Helix 96	AK6	G	154	158	Right-handed 310
Helix 97	AK7	G	166	170	Right-handed 310
Helix 98	AK8	G	173	178	Right-handed alpha
Helix 99	AK9	G	178	195	Right-handed alpha
Helix 100	AL1	G	200	242	Right-handed alpha
Helix 101	AL2	G	243	267	Right-handed alpha
Helix 102	AL3	H	73	78	Right-handed alpha
Helix 103	AL4	H	81	86	Right-handed alpha
Helix 104	AL5	H	89	99	Right-handed alpha
Helix 105	AL6	H	99	144	Right-handed alpha
Helix 106	AL7	H	145	152	Right-handed 310
Helix 107	AL8	H	155	158	Right-handed 310
Helix 108	AL9	H	159	164	Right-handed alpha
Helix 109	AM1	H	171	180	Right-handed alpha

There are 7 sheets in PDB entry 9PZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	21	23	first strand
Strand 2	I	14	16	anti-parallel
Strand 3	I	314	316	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	68	70	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	117	120	first strand
Strand 2	I	127	131	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	138	142	first strand
Strand 2	I	150	154	anti-parallel
Strand 3	I	159	162	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	238	239	first strand
Strand 2	I	249	250	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	246	247	first strand
Strand 2	I	261	263	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	267	269	first strand
Strand 2	I	282	283	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PZM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZM