Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PZO entry

There are 4 chains in PDB entry 9PZO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 96	GLU 570
D	LEU 1	ALA 10
B	ILE 100	SER 563
C	ARG 96	ILE 568

There are 61 helices in PDB entry 9PZO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	96	119	Right-handed alpha
Helix 2	AA2	A	133	135	Right-handed 310
Helix 3	AA3	A	154	169	Right-handed alpha
Helix 4	AA4	A	176	187	Right-handed alpha
Helix 5	AA5	A	191	205	Right-handed alpha
Helix 6	AA6	A	211	220	Right-handed alpha
Helix 7	AA7	A	238	242	Right-handed 310
Helix 8	AA8	A	260	265	Right-handed alpha
Helix 9	AA9	A	267	271	Right-handed 310
Helix 10	AB1	A	321	324	Right-handed 310
Helix 11	AB2	A	335	337	Right-handed 310
Helix 12	AB3	A	387	392	Right-handed 310
Helix 13	AB4	A	393	398	Right-handed alpha
Helix 14	AB5	A	414	432	Right-handed alpha
Helix 15	AB6	A	448	450	Right-handed 310
Helix 16	AB7	A	451	474	Right-handed alpha
Helix 17	AB8	A	504	512	Right-handed alpha
Helix 18	AB9	A	545	557	Right-handed alpha
Helix 19	AC1	A	558	560	Right-handed 310
Helix 20	AC2	A	562	570	Right-handed alpha
Helix 21	AC3	D	2	10	Right-handed alpha
Helix 22	AC4	B	101	109	Right-handed alpha
Helix 23	AC5	B	115	121	Right-handed alpha
Helix 24	AC6	B	138	140	Right-handed 310
Helix 25	AC7	B	159	172	Right-handed alpha
Helix 26	AC8	B	181	192	Right-handed alpha
Helix 27	AC9	B	196	200	Right-handed 310
Helix 28	AD1	B	210	221	Right-handed alpha
Helix 29	AD2	B	224	228	Right-handed alpha
Helix 30	AD3	B	240	245	Right-handed alpha
Helix 31	AD4	B	262	267	Right-handed alpha
Helix 32	AD5	B	268	272	Right-handed 310
Helix 33	AD6	B	273	277	Right-handed 310
Helix 34	AD7	B	311	314	Right-handed 310
Helix 35	AD8	B	325	327	Right-handed 310
Helix 36	AD9	B	377	380	Right-handed 310
Helix 37	AE1	B	383	388	Right-handed alpha
Helix 38	AE2	B	404	422	Right-handed alpha
Helix 39	AE3	B	441	465	Right-handed alpha
Helix 40	AE4	B	495	500	Right-handed alpha
Helix 41	AE5	B	504	514	Right-handed alpha
Helix 42	AE6	B	541	549	Right-handed alpha
Helix 43	AE7	B	550	552	Right-handed 310
Helix 44	AE8	B	556	562	Right-handed alpha
Helix 45	AE9	C	97	122	Right-handed alpha
Helix 46	AF1	C	138	140	Right-handed 310
Helix 47	AF2	C	159	173	Right-handed alpha
Helix 48	AF3	C	181	192	Right-handed alpha
Helix 49	AF4	C	196	200	Right-handed 310
Helix 50	AF5	C	210	222	Right-handed alpha
Helix 51	AF6	C	224	228	Right-handed alpha
Helix 52	AF7	C	240	245	Right-handed alpha
Helix 53	AF8	C	262	267	Right-handed alpha
Helix 54	AF9	C	311	314	Right-handed 310
Helix 55	AG1	C	325	327	Right-handed 310
Helix 56	AG2	C	377	380	Right-handed 310
Helix 57	AG3	C	404	422	Right-handed alpha
Helix 58	AG4	C	441	460	Right-handed alpha
Helix 59	AG5	C	510	514	Right-handed 310
Helix 60	AG6	C	541	553	Right-handed alpha
Helix 61	AG7	C	559	568	Right-handed alpha

There are 13 sheets in PDB entry 9PZO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	131	first strand
Strand 2	A	534	541	anti-parallel
Strand 3	A	372	385	parallel
Strand 4	A	491	495	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	326	333	anti-parallel
Strand 4	A	521	530	anti-parallel
Strand 5	A	372	385	parallel
Strand 6	A	498	502	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	248	first strand
Strand 2	A	251	256	anti-parallel
Strand 3	A	140	144	anti-parallel
Strand 4	A	348	351	anti-parallel
Strand 5	A	366	368	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	304	306	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	136	first strand
Strand 2	B	530	538	anti-parallel
Strand 3	B	362	375	parallel
Strand 4	B	517	526	parallel
Strand 5	B	316	323	anti-parallel
Strand 6	B	229	234	anti-parallel
Strand 7	B	237	239	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	136	first strand
Strand 2	B	530	538	anti-parallel
Strand 3	B	362	375	parallel
Strand 4	B	482	493	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	250	first strand
Strand 2	B	253	257	anti-parallel
Strand 3	B	144	149	anti-parallel
Strand 4	B	337	343	anti-parallel
Strand 5	B	356	359	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	209	first strand
Strand 2	B	436	437	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	136	first strand
Strand 2	C	530	538	anti-parallel
Strand 3	C	362	375	parallel
Strand 4	C	517	526	parallel
Strand 5	C	316	323	anti-parallel
Strand 6	C	229	234	anti-parallel
Strand 7	C	237	238	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	136	first strand
Strand 2	C	530	538	anti-parallel
Strand 3	C	362	375	parallel
Strand 4	C	481	493	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	250	first strand
Strand 2	C	253	257	anti-parallel
Strand 3	C	144	149	anti-parallel
Strand 4	C	338	343	anti-parallel
Strand 5	C	356	358	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	209	first strand
Strand 2	C	436	437	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	293	294	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PZO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZO