Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PZQ entry

There are 6 chains in PDB entry 9PZQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	UNK 21	UNK 244
G	UNK 21	UNK 244
A	LYS 25	GLU 797
B	LEU 34	CYS 800
C	LYS 25	GLU 797
D	LEU 34	CYS 800

There are 91 helices in PDB entry 9PZQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	107	111	Right-handed 310
Helix 2	AA2	F	156	160	Right-handed 310
Helix 3	AA3	F	230	232	Right-handed 310
Helix 4	AA4	G	105	109	Right-handed 310
Helix 5	AA5	G	149	155	Right-handed alpha
Helix 6	AA6	G	211	216	Right-handed alpha
Helix 7	AA7	G	240	242	Right-handed 310
Helix 8	AA8	A	35	50	Right-handed alpha
Helix 9	AA9	A	71	86	Right-handed alpha
Helix 10	AB1	A	104	114	Right-handed alpha
Helix 11	AB2	A	125	130	Right-handed 310
Helix 12	AB3	A	144	156	Right-handed alpha
Helix 13	AB4	A	169	185	Right-handed alpha
Helix 14	AB5	A	204	213	Right-handed alpha
Helix 15	AB6	A	224	239	Right-handed alpha
Helix 16	AB7	A	251	255	Right-handed 310
Helix 17	AB8	A	256	261	Right-handed alpha
Helix 18	AB9	A	276	296	Right-handed alpha
Helix 19	AC1	A	317	327	Right-handed alpha
Helix 20	AC2	A	458	470	Right-handed alpha
Helix 21	AC3	A	499	506	Right-handed alpha
Helix 22	AC4	A	520	525	Right-handed alpha
Helix 23	AC5	A	665	668	Right-handed 310
Helix 24	AC6	A	669	674	Right-handed alpha
Helix 25	AC7	A	687	696	Right-handed alpha
Helix 26	AC8	A	699	704	Right-handed alpha
Helix 27	AC9	A	705	709	Right-handed 310
Helix 28	AD1	A	713	723	Right-handed alpha
Helix 29	AD2	A	733	743	Right-handed alpha
Helix 30	AD3	A	769	782	Right-handed alpha
Helix 31	AD4	A	783	792	Right-handed alpha
Helix 32	AD5	B	48	53	Right-handed alpha
Helix 33	AD6	B	78	91	Right-handed alpha
Helix 34	AD7	B	107	121	Right-handed alpha
Helix 35	AD8	B	128	133	Right-handed 310
Helix 36	AD9	B	150	165	Right-handed alpha
Helix 37	AE1	B	179	192	Right-handed alpha
Helix 38	AE2	B	214	221	Right-handed alpha
Helix 39	AE3	B	232	247	Right-handed alpha
Helix 40	AE4	B	287	308	Right-handed alpha
Helix 41	AE5	B	333	337	Right-handed 310
Helix 42	AE6	B	458	471	Right-handed alpha
Helix 43	AE7	B	495	502	Right-handed alpha
Helix 44	AE8	B	515	522	Right-handed alpha
Helix 45	AE9	B	667	671	Right-handed 310
Helix 46	AF1	B	688	698	Right-handed alpha
Helix 47	AF2	B	698	707	Right-handed alpha
Helix 48	AF3	B	712	722	Right-handed alpha
Helix 49	AF4	B	732	741	Right-handed alpha
Helix 50	AF5	B	770	784	Right-handed alpha
Helix 51	AF6	B	786	796	Right-handed alpha
Helix 52	AF7	C	35	50	Right-handed alpha
Helix 53	AF8	C	71	86	Right-handed alpha
Helix 54	AF9	C	104	114	Right-handed alpha
Helix 55	AG1	C	144	158	Right-handed alpha
Helix 56	AG2	C	169	188	Right-handed alpha
Helix 57	AG3	C	204	213	Right-handed alpha
Helix 58	AG4	C	224	238	Right-handed alpha
Helix 59	AG5	C	251	255	Right-handed 310
Helix 60	AG6	C	256	261	Right-handed alpha
Helix 61	AG7	C	276	296	Right-handed alpha
Helix 62	AG8	C	317	327	Right-handed alpha
Helix 63	AG9	C	458	470	Right-handed alpha
Helix 64	AH1	C	499	507	Right-handed alpha
Helix 65	AH2	C	520	527	Right-handed alpha
Helix 66	AH3	C	665	668	Right-handed 310
Helix 67	AH4	C	669	674	Right-handed alpha
Helix 68	AH5	C	687	696	Right-handed alpha
Helix 69	AH6	C	699	707	Right-handed alpha
Helix 70	AH7	C	713	723	Right-handed alpha
Helix 71	AH8	C	733	743	Right-handed alpha
Helix 72	AH9	C	769	782	Right-handed alpha
Helix 73	AI1	C	783	792	Right-handed alpha
Helix 74	AI2	D	48	53	Right-handed alpha
Helix 75	AI3	D	78	91	Right-handed alpha
Helix 76	AI4	D	107	121	Right-handed alpha
Helix 77	AI5	D	128	133	Right-handed 310
Helix 78	AI6	D	150	165	Right-handed alpha
Helix 79	AI7	D	180	193	Right-handed alpha
Helix 80	AI8	D	214	220	Right-handed alpha
Helix 81	AI9	D	232	246	Right-handed alpha
Helix 82	AJ1	D	287	308	Right-handed alpha
Helix 83	AJ2	D	459	472	Right-handed alpha
Helix 84	AJ3	D	494	501	Right-handed alpha
Helix 85	AJ4	D	515	522	Right-handed alpha
Helix 86	AJ5	D	688	698	Right-handed alpha
Helix 87	AJ6	D	698	707	Right-handed alpha
Helix 88	AJ7	D	712	722	Right-handed alpha
Helix 89	AJ8	D	732	740	Right-handed alpha
Helix 90	AJ9	D	771	784	Right-handed alpha
Helix 91	AK1	D	786	796	Right-handed alpha

There are 36 sheets in PDB entry 9PZQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	26	first strand
Strand 2	F	38	45	anti-parallel
Strand 3	F	98	103	anti-parallel
Strand 4	F	88	93	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	32	first strand
Strand 2	F	136	140	parallel
Strand 3	F	112	118	anti-parallel
Strand 4	F	53	59	anti-parallel
Strand 5	F	65	72	anti-parallel
Strand 6	F	79	80	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	32	first strand
Strand 2	F	136	140	parallel
Strand 3	F	112	118	anti-parallel
Strand 4	F	131	132	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	153	first strand
Strand 2	F	164	174	anti-parallel
Strand 3	F	203	213	anti-parallel
Strand 4	F	192	194	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	153	first strand
Strand 2	F	164	174	anti-parallel
Strand 3	F	203	213	anti-parallel
Strand 4	F	198	200	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	183	first strand
Strand 2	F	223	228	anti-parallel
Strand 3	F	233	238	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	24	27	first strand
Strand 2	G	39	45	anti-parallel
Strand 3	G	97	101	anti-parallel
Strand 4	G	88	92	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	34	first strand
Strand 2	G	131	135	parallel
Strand 3	G	110	115	anti-parallel
Strand 4	G	60	64	anti-parallel
Strand 5	G	71	74	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	146	first strand
Strand 2	G	157	167	anti-parallel
Strand 3	G	201	210	anti-parallel
Strand 4	G	187	192	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	182	183	first strand
Strand 2	G	172	178	anti-parallel
Strand 3	G	219	226	anti-parallel
Strand 4	G	233	238	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	65	first strand
Strand 2	A	26	32	parallel
Strand 3	A	87	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	137	139	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	167	first strand
Strand 2	A	218	222	parallel
Strand 3	A	246	248	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	351	356	anti-parallel
Strand 3	A	361	367	anti-parallel
Strand 4	A	372	374	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	476	first strand
Strand 2	A	397	401	parallel
Strand 3	A	512	518	parallel
Strand 4	A	753	761	anti-parallel
Strand 5	A	534	540	anti-parallel
Strand 6	A	728	732	anti-parallel
Strand 7	A	681	682	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	450	457	anti-parallel
Strand 3	A	434	439	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	495	497	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	746	747	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	74	first strand
Strand 2	B	35	41	parallel
Strand 3	B	97	102	parallel
Strand 4	B	124	126	parallel
Strand 5	B	144	145	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	205	first strand
Strand 2	B	169	174	parallel
Strand 3	B	226	230	parallel
Strand 4	B	254	257	parallel
Strand 5	B	277	280	parallel
Strand 6	B	362	366	anti-parallel
Strand 7	B	372	377	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	410	first strand
Strand 2	B	474	479	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	449	457	anti-parallel
Strand 3	B	434	441	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	524	first strand
Strand 2	B	764	765	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	536	first strand
Strand 2	B	727	731	anti-parallel
Strand 3	B	682	683	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	65	first strand
Strand 2	C	26	32	parallel
Strand 3	C	87	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	137	139	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	218	222	parallel
Strand 3	C	246	248	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	271	first strand
Strand 2	C	351	356	anti-parallel
Strand 3	C	361	367	anti-parallel
Strand 4	C	372	374	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	397	402	parallel
Strand 3	C	512	518	parallel
Strand 4	C	753	761	anti-parallel
Strand 5	C	534	540	anti-parallel
Strand 6	C	728	732	anti-parallel
Strand 7	C	681	682	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	450	457	anti-parallel
Strand 3	C	434	439	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	489	first strand
Strand 2	C	496	497	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	542	543	first strand
Strand 2	C	746	747	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	74	first strand
Strand 2	D	35	41	parallel
Strand 3	D	97	102	parallel
Strand 4	D	124	126	parallel
Strand 5	D	144	146	parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	205	first strand
Strand 2	D	169	174	parallel
Strand 3	D	226	230	parallel
Strand 4	D	254	257	parallel
Strand 5	D	277	280	parallel
Strand 6	D	362	366	anti-parallel
Strand 7	D	372	377	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	474	479	first strand
Strand 2	D	405	410	parallel
Strand 3	D	507	508	parallel
Strand 4	D	764	765	anti-parallel
Strand 5	D	523	524	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	420	first strand
Strand 2	D	449	458	anti-parallel
Strand 3	D	434	441	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	530	first strand
Strand 2	D	760	761	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	533	536	first strand
Strand 2	D	727	731	anti-parallel
Strand 3	D	682	683	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PZQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZQ