Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9PZV entry

There are 6 chains in PDB entry 9PZV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	MET 394
B	LEU 34	PHE 396
H	GLY 22	THR 139
I	ASP 21	ILE 134
J	VAL 21	VAL 138
K	ILE 22	GLU 129

There are 22 helices in PDB entry 9PZV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	49	Right-handed alpha
Helix 2	AA2	A	70	86	Right-handed alpha
Helix 3	AA3	A	104	114	Right-handed alpha
Helix 4	AA4	A	144	156	Right-handed alpha
Helix 5	AA5	A	170	188	Right-handed alpha
Helix 6	AA6	A	204	214	Right-handed alpha
Helix 7	AA7	A	224	239	Right-handed alpha
Helix 8	AA8	A	251	255	Right-handed 310
Helix 9	AA9	A	256	261	Right-handed alpha
Helix 10	AB1	A	277	298	Right-handed alpha
Helix 11	AB2	A	317	327	Right-handed alpha
Helix 12	AB3	B	48	53	Right-handed alpha
Helix 13	AB4	B	78	91	Right-handed alpha
Helix 14	AB5	B	107	121	Right-handed alpha
Helix 15	AB6	B	128	133	Right-handed alpha
Helix 16	AB7	B	150	165	Right-handed alpha
Helix 17	AB8	B	179	192	Right-handed alpha
Helix 18	AB9	B	216	221	Right-handed alpha
Helix 19	AC1	B	232	245	Right-handed alpha
Helix 20	AC2	B	287	310	Right-handed alpha
Helix 21	AC3	H	107	111	Right-handed 310
Helix 22	AC4	I	105	109	Right-handed 310

There are 15 sheets in PDB entry 9PZV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	65	first strand
Strand 2	A	26	32	parallel
Strand 3	A	90	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	137	138	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	164	167	parallel
Strand 3	A	219	222	parallel
Strand 4	A	247	249	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	270	first strand
Strand 2	A	351	357	anti-parallel
Strand 3	A	360	367	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	74	first strand
Strand 2	B	35	41	parallel
Strand 3	B	98	100	parallel
Strand 4	B	124	126	parallel
Strand 5	B	144	145	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	170	174	parallel
Strand 3	B	226	230	parallel
Strand 4	B	254	257	parallel
Strand 5	B	277	281	parallel
Strand 6	B	361	366	anti-parallel
Strand 7	B	372	379	anti-parallel
Strand 8	B	382	385	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	26	first strand
Strand 2	H	42	45	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	H	138	139	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	40	first strand
Strand 2	H	100	103	anti-parallel
Strand 3	H	88	91	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	78	80	first strand
Strand 2	H	69	72	anti-parallel
Strand 3	H	53	59	anti-parallel
Strand 4	H	113	122	anti-parallel
Strand 5	H	125	131	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	27	first strand
Strand 2	I	39	44	anti-parallel
Strand 3	I	96	101	anti-parallel
Strand 4	I	88	93	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	79	80	first strand
Strand 2	I	71	75	anti-parallel
Strand 3	I	60	64	anti-parallel
Strand 4	I	111	114	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	23	25	first strand
Strand 2	J	37	43	anti-parallel
Strand 3	J	97	102	anti-parallel
Strand 4	J	87	92	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	77	79	first strand
Strand 2	J	68	70	anti-parallel
Strand 3	J	53	57	anti-parallel
Strand 4	J	112	116	anti-parallel
Strand 5	J	134	135	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	24	27	first strand
Strand 2	K	40	45	anti-parallel
Strand 3	K	94	99	anti-parallel
Strand 4	K	86	91	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	77	78	first strand
Strand 2	K	69	73	anti-parallel
Strand 3	K	57	62	anti-parallel
Strand 4	K	109	114	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9PZV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZV