Analysis of interatomic Contacts of Structural Units in PDB entry:
9PZX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9PZX entry

There are 4 chains in PDB entry 9PZX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 25ARG 346
B
 GLY 30SER 397
J
 GLN 20VAL 138
K
 ASP 21GLU 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9PZX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 54Right-handed alpha
Helix 2
AA2
A
70 82Right-handed alpha
Helix 3
AA3
A
83 85Right-handed 310
Helix 4
AA4
A
104 113Right-handed alpha
Helix 5
AA5
A
125 130Right-handed 310
Helix 6
AA6
A
277 296Right-handed alpha
Helix 7
AA7
A
317 327Right-handed alpha
Helix 8
AA8
B
47 53Right-handed alpha
Helix 9
AA9
B
54 59Right-handed alpha
Helix 10
AB1
B
78 93Right-handed alpha
Helix 11
AB2
B
107 121Right-handed alpha
Helix 12
AB3
B
150 165Right-handed alpha
Helix 13
AB4
B
179 192Right-handed alpha
Helix 14
AB5
B
215 220Right-handed alpha
Helix 15
AB6
B
232 247Right-handed alpha
Helix 16
AB7
B
287 310Right-handed alpha
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There are 10 sheets in PDB entry 9PZX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
28 32parallel
Strand 3
A
87 92parallel
Strand 4
A
118 120parallel
Strand 5
A
137 139parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 74first strand
Strand 2
B
33 41parallel
Strand 3
B
97 101parallel
Strand 4
B
124 128parallel
Strand 5
B
144 146parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
172 174parallel
Strand 3
B
227 230parallel
Strand 4
B
255 257parallel
Strand 5
B
277 281parallel
Strand 6
B
361 366anti-parallel
Strand 7
B
372 379anti-parallel
Strand 8
B
382 385anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
23 25first strand
Strand 2
J
37 43anti-parallel
Strand 3
J
97 102anti-parallel
Strand 4
J
87 92anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
29 30first strand
Strand 2
J
134 137parallel
Strand 3
J
112 117anti-parallel
Strand 4
J
53 58anti-parallel
Strand 5
J
68 70anti-parallel
Strand 6
J
77 79anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
29 30first strand
Strand 2
J
134 137parallel
Strand 3
J
112 117anti-parallel
Strand 4
J
129 130anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
26 27first strand
Strand 2
K
39 44anti-parallel
Strand 3
K
94 99anti-parallel
Strand 4
K
86 91anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
30 31first strand
Strand 2
K
127 128parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
50 51first strand
Strand 2
K
54 55anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
77 78first strand
Strand 2
K
69 73anti-parallel
Strand 3
K
58 62anti-parallel
Strand 4
K
109 114anti-parallel
Strand 5
K
121 122anti-parallel
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