Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q05

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q05 entry

There is 1 chain in PDB entry 9Q05 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 14	LEU 1468

There are 62 helices in PDB entry 9Q05. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	102	Right-handed 310
Helix 2	AA2	A	147	151	Right-handed 310
Helix 3	AA3	A	178	195	Right-handed alpha
Helix 4	AA4	A	195	211	Right-handed alpha
Helix 5	AA5	A	213	219	Right-handed alpha
Helix 6	AA6	A	220	223	Right-handed 310
Helix 7	AA7	A	224	241	Right-handed alpha
Helix 8	AA8	A	265	277	Right-handed alpha
Helix 9	AA9	A	279	294	Right-handed alpha
Helix 10	AB1	A	295	297	Right-handed 310
Helix 11	AB2	A	301	310	Right-handed alpha
Helix 12	AB3	A	314	324	Right-handed alpha
Helix 13	AB4	A	324	337	Right-handed alpha
Helix 14	AB5	A	340	352	Right-handed alpha
Helix 15	AB6	A	358	373	Right-handed alpha
Helix 16	AB7	A	374	377	Right-handed 310
Helix 17	AB8	A	384	390	Right-handed alpha
Helix 18	AB9	A	391	405	Right-handed alpha
Helix 19	AC1	A	407	426	Right-handed alpha
Helix 20	AC2	A	428	430	Right-handed 310
Helix 21	AC3	A	431	447	Right-handed alpha
Helix 22	AC4	A	451	495	Right-handed alpha
Helix 23	AC5	A	497	516	Right-handed alpha
Helix 24	AC6	A	521	536	Right-handed alpha
Helix 25	AC7	A	539	545	Right-handed 310
Helix 26	AC8	A	558	575	Right-handed alpha
Helix 27	AC9	A	576	578	Right-handed 310
Helix 28	AD1	A	623	635	Right-handed alpha
Helix 29	AD2	A	665	669	Right-handed 310
Helix 30	AD3	A	679	686	Right-handed 310
Helix 31	AD4	A	717	727	Right-handed alpha
Helix 32	AD5	A	733	742	Right-handed alpha
Helix 33	AD6	A	747	750	Right-handed 310
Helix 34	AD7	A	751	772	Right-handed alpha
Helix 35	AD8	A	777	795	Right-handed alpha
Helix 36	AD9	A	836	841	Right-handed alpha
Helix 37	AE1	A	846	851	Right-handed alpha
Helix 38	AE2	A	872	886	Right-handed alpha
Helix 39	AE3	A	899	903	Right-handed 310
Helix 40	AE4	A	922	924	Right-handed 310
Helix 41	AE5	A	925	935	Right-handed alpha
Helix 42	AE6	A	959	973	Right-handed alpha
Helix 43	AE7	A	989	1005	Right-handed alpha
Helix 44	AE8	A	1024	1042	Right-handed alpha
Helix 45	AE9	A	1069	1072	Right-handed 310
Helix 46	AF1	A	1089	1101	Right-handed alpha
Helix 47	AF2	A	1132	1139	Right-handed alpha
Helix 48	AF3	A	1148	1158	Right-handed alpha
Helix 49	AF4	A	1161	1176	Right-handed alpha
Helix 50	AF5	A	1181	1195	Right-handed alpha
Helix 51	AF6	A	1197	1205	Right-handed alpha
Helix 52	AF7	A	1211	1219	Right-handed alpha
Helix 53	AF8	A	1259	1267	Right-handed alpha
Helix 54	AF9	A	1298	1301	Right-handed 310
Helix 55	AG1	A	1302	1319	Right-handed alpha
Helix 56	AG2	A	1339	1350	Right-handed alpha
Helix 57	AG3	A	1368	1376	Right-handed alpha
Helix 58	AG4	A	1376	1385	Right-handed alpha
Helix 59	AG5	A	1396	1414	Right-handed alpha
Helix 60	AG6	A	1418	1432	Right-handed alpha
Helix 61	AG7	A	1448	1459	Right-handed alpha
Helix 62	AG8	A	1459	1468	Right-handed alpha

There are 16 sheets in PDB entry 9Q05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	67	68	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	125	132	anti-parallel
Strand 4	A	108	114	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	57	first strand
Strand 2	A	36	43	anti-parallel
Strand 3	A	73	80	anti-parallel
Strand 4	A	90	98	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	552	first strand
Strand 2	A	582	585	parallel
Strand 3	A	712	713	anti-parallel
Strand 4	A	694	695	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	599	first strand
Strand 2	A	650	653	anti-parallel
Strand 3	A	659	662	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	611	first strand
Strand 2	A	617	619	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	673	first strand
Strand 2	A	688	690	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	707	first strand
Strand 2	A	698	702	anti-parallel
Strand 3	A	830	833	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	860	864	first strand
Strand 2	A	906	914	parallel
Strand 3	A	944	951	parallel
Strand 4	A	975	976	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	867	868	first strand
Strand 2	A	906	914	parallel
Strand 3	A	944	951	parallel
Strand 4	A	981	984	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1017	1018	first strand
Strand 2	A	1112	1113	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1045	1050	first strand
Strand 2	A	1061	1067	anti-parallel
Strand 3	A	1240	1246	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1225	1228	first strand
Strand 2	A	1081	1084	anti-parallel
Strand 3	A	1276	1279	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1107	1108	first strand
Strand 2	A	1130	1131	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1248	1250	first strand
Strand 2	A	1256	1258	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1354	1359	first strand
Strand 2	A	1325	1331	parallel
Strand 3	A	1293	1296	parallel
Strand 4	A	1390	1395	parallel
Strand 5	A	1435	1439	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q05

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q05