Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q06 entry

There are 2 chains in PDB entry 9Q06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 14	LEU 1468
B	VAL 14	LEU 1468

There are124 helices in PDB entry 9Q06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	102	Right-handed 310
Helix 2	AA2	A	147	151	Right-handed 310
Helix 3	AA3	A	178	195	Right-handed alpha
Helix 4	AA4	A	195	211	Right-handed alpha
Helix 5	AA5	A	213	219	Right-handed alpha
Helix 6	AA6	A	220	222	Right-handed 310
Helix 7	AA7	A	224	241	Right-handed alpha
Helix 8	AA8	A	265	277	Right-handed alpha
Helix 9	AA9	A	279	294	Right-handed alpha
Helix 10	AB1	A	295	297	Right-handed 310
Helix 11	AB2	A	301	310	Right-handed alpha
Helix 12	AB3	A	314	324	Right-handed alpha
Helix 13	AB4	A	324	337	Right-handed alpha
Helix 14	AB5	A	340	351	Right-handed alpha
Helix 15	AB6	A	358	373	Right-handed alpha
Helix 16	AB7	A	374	381	Right-handed 310
Helix 17	AB8	A	384	390	Right-handed alpha
Helix 18	AB9	A	391	406	Right-handed alpha
Helix 19	AC1	A	407	426	Right-handed alpha
Helix 20	AC2	A	428	430	Right-handed 310
Helix 21	AC3	A	431	447	Right-handed alpha
Helix 22	AC4	A	451	495	Right-handed alpha
Helix 23	AC5	A	497	516	Right-handed alpha
Helix 24	AC6	A	521	536	Right-handed alpha
Helix 25	AC7	A	540	548	Right-handed 310
Helix 26	AC8	A	558	575	Right-handed alpha
Helix 27	AC9	A	576	578	Right-handed 310
Helix 28	AD1	A	621	623	Right-handed 310
Helix 29	AD2	A	624	633	Right-handed alpha
Helix 30	AD3	A	665	669	Right-handed 310
Helix 31	AD4	A	679	686	Right-handed 310
Helix 32	AD5	A	718	727	Right-handed alpha
Helix 33	AD6	A	733	742	Right-handed alpha
Helix 34	AD7	A	747	750	Right-handed 310
Helix 35	AD8	A	751	771	Right-handed alpha
Helix 36	AD9	A	777	795	Right-handed alpha
Helix 37	AE1	A	836	841	Right-handed alpha
Helix 38	AE2	A	846	851	Right-handed alpha
Helix 39	AE3	A	872	886	Right-handed alpha
Helix 40	AE4	A	922	924	Right-handed 310
Helix 41	AE5	A	925	935	Right-handed alpha
Helix 42	AE6	A	959	973	Right-handed alpha
Helix 43	AE7	A	989	1005	Right-handed alpha
Helix 44	AE8	A	1024	1041	Right-handed alpha
Helix 45	AE9	A	1069	1072	Right-handed 310
Helix 46	AF1	A	1089	1101	Right-handed alpha
Helix 47	AF2	A	1132	1139	Right-handed alpha
Helix 48	AF3	A	1148	1158	Right-handed alpha
Helix 49	AF4	A	1161	1176	Right-handed alpha
Helix 50	AF5	A	1181	1195	Right-handed alpha
Helix 51	AF6	A	1197	1205	Right-handed alpha
Helix 52	AF7	A	1211	1219	Right-handed alpha
Helix 53	AF8	A	1259	1267	Right-handed alpha
Helix 54	AF9	A	1298	1301	Right-handed 310
Helix 55	AG1	A	1302	1319	Right-handed alpha
Helix 56	AG2	A	1339	1350	Right-handed alpha
Helix 57	AG3	A	1368	1376	Right-handed alpha
Helix 58	AG4	A	1376	1386	Right-handed alpha
Helix 59	AG5	A	1396	1414	Right-handed alpha
Helix 60	AG6	A	1418	1432	Right-handed alpha
Helix 61	AG7	A	1448	1458	Right-handed alpha
Helix 62	AG8	A	1459	1468	Right-handed alpha
Helix 63	AG9	B	100	102	Right-handed 310
Helix 64	AH1	B	147	151	Right-handed 310
Helix 65	AH2	B	178	195	Right-handed alpha
Helix 66	AH3	B	195	211	Right-handed alpha
Helix 67	AH4	B	213	219	Right-handed alpha
Helix 68	AH5	B	220	222	Right-handed 310
Helix 69	AH6	B	224	241	Right-handed alpha
Helix 70	AH7	B	265	277	Right-handed alpha
Helix 71	AH8	B	279	294	Right-handed alpha
Helix 72	AH9	B	295	297	Right-handed 310
Helix 73	AI1	B	301	310	Right-handed alpha
Helix 74	AI2	B	314	324	Right-handed alpha
Helix 75	AI3	B	324	337	Right-handed alpha
Helix 76	AI4	B	340	351	Right-handed alpha
Helix 77	AI5	B	358	373	Right-handed alpha
Helix 78	AI6	B	374	381	Right-handed 310
Helix 79	AI7	B	384	390	Right-handed alpha
Helix 80	AI8	B	391	406	Right-handed alpha
Helix 81	AI9	B	407	426	Right-handed alpha
Helix 82	AJ1	B	428	430	Right-handed 310
Helix 83	AJ2	B	431	447	Right-handed alpha
Helix 84	AJ3	B	451	495	Right-handed alpha
Helix 85	AJ4	B	497	516	Right-handed alpha
Helix 86	AJ5	B	521	536	Right-handed alpha
Helix 87	AJ6	B	540	548	Right-handed 310
Helix 88	AJ7	B	558	575	Right-handed alpha
Helix 89	AJ8	B	576	578	Right-handed 310
Helix 90	AJ9	B	621	623	Right-handed 310
Helix 91	AK1	B	624	633	Right-handed alpha
Helix 92	AK2	B	665	669	Right-handed 310
Helix 93	AK3	B	679	686	Right-handed 310
Helix 94	AK4	B	718	727	Right-handed alpha
Helix 95	AK5	B	733	742	Right-handed alpha
Helix 96	AK6	B	747	750	Right-handed 310
Helix 97	AK7	B	751	771	Right-handed alpha
Helix 98	AK8	B	777	795	Right-handed alpha
Helix 99	AK9	B	836	841	Right-handed alpha
Helix 100	AL1	B	846	851	Right-handed alpha
Helix 101	AL2	B	872	886	Right-handed alpha
Helix 102	AL3	B	922	924	Right-handed 310
Helix 103	AL4	B	925	935	Right-handed alpha
Helix 104	AL5	B	959	973	Right-handed alpha
Helix 105	AL6	B	989	1005	Right-handed alpha
Helix 106	AL7	B	1024	1041	Right-handed alpha
Helix 107	AL8	B	1069	1072	Right-handed 310
Helix 108	AL9	B	1089	1101	Right-handed alpha
Helix 109	AM1	B	1132	1139	Right-handed alpha
Helix 110	AM2	B	1148	1158	Right-handed alpha
Helix 111	AM3	B	1161	1176	Right-handed alpha
Helix 112	AM4	B	1181	1195	Right-handed alpha
Helix 113	AM5	B	1197	1205	Right-handed alpha
Helix 114	AM6	B	1211	1219	Right-handed alpha
Helix 115	AM7	B	1259	1267	Right-handed alpha
Helix 116	AM8	B	1298	1301	Right-handed 310
Helix 117	AM9	B	1302	1319	Right-handed alpha
Helix 118	AN1	B	1339	1350	Right-handed alpha
Helix 119	AN2	B	1368	1376	Right-handed alpha
Helix 120	AN3	B	1376	1386	Right-handed alpha
Helix 121	AN4	B	1396	1414	Right-handed alpha
Helix 122	AN5	B	1418	1432	Right-handed alpha
Helix 123	AN6	B	1448	1458	Right-handed alpha
Helix 124	AN7	B	1459	1468	Right-handed alpha

There are 28 sheets in PDB entry 9Q06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	68	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	125	132	anti-parallel
Strand 4	A	108	114	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	57	first strand
Strand 2	A	35	43	anti-parallel
Strand 3	A	73	81	anti-parallel
Strand 4	A	90	98	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	552	first strand
Strand 2	A	582	585	parallel
Strand 3	A	712	713	anti-parallel
Strand 4	A	694	695	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	599	first strand
Strand 2	A	650	653	anti-parallel
Strand 3	A	659	662	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	611	first strand
Strand 2	A	617	619	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	673	first strand
Strand 2	A	688	690	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	707	first strand
Strand 2	A	698	702	anti-parallel
Strand 3	A	831	833	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	860	864	first strand
Strand 2	A	906	914	parallel
Strand 3	A	944	951	parallel
Strand 4	A	975	976	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	867	868	first strand
Strand 2	A	906	914	parallel
Strand 3	A	944	951	parallel
Strand 4	A	981	984	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1017	1018	first strand
Strand 2	A	1112	1113	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1225	1228	first strand
Strand 2	A	1081	1084	anti-parallel
Strand 3	A	1273	1279	anti-parallel
Strand 4	A	1042	1050	anti-parallel
Strand 5	A	1062	1067	anti-parallel
Strand 6	A	1240	1245	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1107	1108	first strand
Strand 2	A	1130	1131	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1248	1250	first strand
Strand 2	A	1256	1258	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1354	1359	first strand
Strand 2	A	1325	1331	parallel
Strand 3	A	1293	1296	parallel
Strand 4	A	1390	1395	parallel
Strand 5	A	1435	1439	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	68	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	125	132	anti-parallel
Strand 4	B	108	114	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	57	first strand
Strand 2	B	35	43	anti-parallel
Strand 3	B	73	81	anti-parallel
Strand 4	B	90	98	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	552	first strand
Strand 2	B	582	585	parallel
Strand 3	B	712	713	anti-parallel
Strand 4	B	694	695	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	598	599	first strand
Strand 2	B	650	653	anti-parallel
Strand 3	B	659	662	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	609	611	first strand
Strand 2	B	617	619	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	671	673	first strand
Strand 2	B	688	690	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	707	first strand
Strand 2	B	698	702	anti-parallel
Strand 3	B	831	833	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	860	864	first strand
Strand 2	B	906	914	parallel
Strand 3	B	944	951	parallel
Strand 4	B	975	976	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	867	868	first strand
Strand 2	B	906	914	parallel
Strand 3	B	944	951	parallel
Strand 4	B	981	984	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1017	1018	first strand
Strand 2	B	1112	1113	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1225	1228	first strand
Strand 2	B	1081	1084	anti-parallel
Strand 3	B	1273	1279	anti-parallel
Strand 4	B	1042	1050	anti-parallel
Strand 5	B	1062	1067	anti-parallel
Strand 6	B	1240	1245	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1107	1108	first strand
Strand 2	B	1130	1131	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1248	1250	first strand
Strand 2	B	1256	1258	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1354	1359	first strand
Strand 2	B	1325	1331	parallel
Strand 3	B	1293	1296	parallel
Strand 4	B	1390	1395	parallel
Strand 5	B	1435	1439	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q06

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q06