Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q07 entry

There are 4 chains in PDB entry 9Q07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 39	ALA 338
B	GLN 38	ALA 338
C	GLY 39	ALA 338
D	GLY 39	LYS 337

There are 20 helices in PDB entry 9Q07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	70	Right-handed 310
Helix 2	AA2	A	81	90	Right-handed alpha
Helix 3	AA3	A	204	208	Right-handed 310
Helix 4	AA4	A	214	218	Right-handed 310
Helix 5	AA5	A	309	312	Right-handed 310
Helix 6	AA6	B	66	70	Right-handed 310
Helix 7	AA7	B	81	91	Right-handed alpha
Helix 8	AA8	B	204	208	Right-handed 310
Helix 9	AA9	B	214	218	Right-handed 310
Helix 10	AB1	C	66	70	Right-handed 310
Helix 11	AB2	C	81	91	Right-handed alpha
Helix 12	AB3	C	93	97	Right-handed 310
Helix 13	AB4	C	204	208	Right-handed 310
Helix 14	AB5	C	309	312	Right-handed 310
Helix 15	AB6	D	66	70	Right-handed 310
Helix 16	AB7	D	81	91	Right-handed alpha
Helix 17	AB8	D	93	97	Right-handed 310
Helix 18	AB9	D	204	208	Right-handed 310
Helix 19	AC1	D	214	218	Right-handed 310
Helix 20	AC2	D	309	312	Right-handed 310

There are 16 sheets in PDB entry 9Q07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	41	46	anti-parallel
Strand 3	A	149	156	anti-parallel
Strand 4	A	121	128	anti-parallel
Strand 5	A	99	101	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	181	182	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	137	first strand
Strand 2	A	140	146	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	179	first strand
Strand 2	A	227	234	anti-parallel
Strand 3	A	239	247	anti-parallel
Strand 4	A	261	272	anti-parallel
Strand 5	A	275	282	anti-parallel
Strand 6	A	300	308	anti-parallel
Strand 7	A	314	320	anti-parallel
Strand 8	A	326	333	anti-parallel
Strand 9	A	168	179	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	40	46	anti-parallel
Strand 3	B	149	157	anti-parallel
Strand 4	B	121	128	anti-parallel
Strand 5	B	99	101	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	181	182	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	137	first strand
Strand 2	B	140	146	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	179	first strand
Strand 2	B	227	234	anti-parallel
Strand 3	B	239	247	anti-parallel
Strand 4	B	261	272	anti-parallel
Strand 5	B	275	282	anti-parallel
Strand 6	B	300	308	anti-parallel
Strand 7	B	314	320	anti-parallel
Strand 8	B	326	333	anti-parallel
Strand 9	B	168	179	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	42	46	anti-parallel
Strand 3	C	148	156	anti-parallel
Strand 4	C	121	129	anti-parallel
Strand 5	C	100	101	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	181	182	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	135	first strand
Strand 2	C	143	145	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	179	first strand
Strand 2	C	227	234	anti-parallel
Strand 3	C	239	247	anti-parallel
Strand 4	C	261	272	anti-parallel
Strand 5	C	275	282	anti-parallel
Strand 6	C	300	308	anti-parallel
Strand 7	C	314	320	anti-parallel
Strand 8	C	326	333	anti-parallel
Strand 9	C	168	179	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	40	46	anti-parallel
Strand 3	D	149	157	anti-parallel
Strand 4	D	121	128	anti-parallel
Strand 5	D	100	101	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	D	181	182	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	137	first strand
Strand 2	D	140	145	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	179	first strand
Strand 2	D	227	234	anti-parallel
Strand 3	D	239	247	anti-parallel
Strand 4	D	261	272	anti-parallel
Strand 5	D	275	282	anti-parallel
Strand 6	D	300	308	anti-parallel
Strand 7	D	314	320	anti-parallel
Strand 8	D	326	333	anti-parallel
Strand 9	D	168	179	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q07

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q07