Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q0D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q0D entry

There are 4 chains in PDB entry 9Q0D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	PHE 500
B	VAL 4	PHE 500
C	VAL 4	PHE 500
D	VAL 4	PHE 500

There are 68 helices in PDB entry 9Q0D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	69	Right-handed alpha
Helix 2	AA2	A	70	88	Right-handed alpha
Helix 3	AA3	A	88	101	Right-handed alpha
Helix 4	AA4	A	103	122	Right-handed alpha
Helix 5	AA5	A	123	128	Right-handed alpha
Helix 6	AA6	A	162	176	Right-handed alpha
Helix 7	AA7	A	188	201	Right-handed alpha
Helix 8	AA8	A	214	224	Right-handed alpha
Helix 9	AA9	A	235	249	Right-handed alpha
Helix 10	AB1	A	270	284	Right-handed alpha
Helix 11	AB2	A	285	288	Right-handed 310
Helix 12	AB3	A	302	315	Right-handed alpha
Helix 13	AB4	A	334	351	Right-handed alpha
Helix 14	AB5	A	385	390	Right-handed alpha
Helix 15	AB6	A	404	414	Right-handed alpha
Helix 16	AB7	A	427	438	Right-handed alpha
Helix 17	AB8	A	472	480	Right-handed alpha
Helix 18	AB9	B	48	69	Right-handed alpha
Helix 19	AC1	B	70	88	Right-handed alpha
Helix 20	AC2	B	88	101	Right-handed alpha
Helix 21	AC3	B	103	122	Right-handed alpha
Helix 22	AC4	B	123	128	Right-handed alpha
Helix 23	AC5	B	162	176	Right-handed alpha
Helix 24	AC6	B	188	201	Right-handed alpha
Helix 25	AC7	B	214	224	Right-handed alpha
Helix 26	AC8	B	235	249	Right-handed alpha
Helix 27	AC9	B	270	284	Right-handed alpha
Helix 28	AD1	B	285	288	Right-handed 310
Helix 29	AD2	B	302	315	Right-handed alpha
Helix 30	AD3	B	334	351	Right-handed alpha
Helix 31	AD4	B	385	390	Right-handed alpha
Helix 32	AD5	B	404	414	Right-handed alpha
Helix 33	AD6	B	427	438	Right-handed alpha
Helix 34	AD7	B	472	480	Right-handed alpha
Helix 35	AD8	C	48	69	Right-handed alpha
Helix 36	AD9	C	70	88	Right-handed alpha
Helix 37	AE1	C	88	101	Right-handed alpha
Helix 38	AE2	C	103	122	Right-handed alpha
Helix 39	AE3	C	123	128	Right-handed alpha
Helix 40	AE4	C	162	176	Right-handed alpha
Helix 41	AE5	C	188	201	Right-handed alpha
Helix 42	AE6	C	214	224	Right-handed alpha
Helix 43	AE7	C	235	249	Right-handed alpha
Helix 44	AE8	C	270	284	Right-handed alpha
Helix 45	AE9	C	285	288	Right-handed 310
Helix 46	AF1	C	302	315	Right-handed alpha
Helix 47	AF2	C	334	351	Right-handed alpha
Helix 48	AF3	C	385	390	Right-handed alpha
Helix 49	AF4	C	404	414	Right-handed alpha
Helix 50	AF5	C	427	438	Right-handed alpha
Helix 51	AF6	C	472	480	Right-handed alpha
Helix 52	AF7	D	48	69	Right-handed alpha
Helix 53	AF8	D	70	88	Right-handed alpha
Helix 54	AF9	D	88	101	Right-handed alpha
Helix 55	AG1	D	103	122	Right-handed alpha
Helix 56	AG2	D	123	128	Right-handed alpha
Helix 57	AG3	D	162	176	Right-handed alpha
Helix 58	AG4	D	188	201	Right-handed alpha
Helix 59	AG5	D	214	224	Right-handed alpha
Helix 60	AG6	D	235	249	Right-handed alpha
Helix 61	AG7	D	270	284	Right-handed alpha
Helix 62	AG8	D	285	288	Right-handed 310
Helix 63	AG9	D	302	315	Right-handed alpha
Helix 64	AH1	D	334	351	Right-handed alpha
Helix 65	AH2	D	385	390	Right-handed alpha
Helix 66	AH3	D	404	414	Right-handed alpha
Helix 67	AH4	D	427	438	Right-handed alpha
Helix 68	AH5	D	472	480	Right-handed alpha

There are 18 sheets in PDB entry 9Q0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	20	22	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	40	45	anti-parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	357	first strand
Strand 2	B	376	379	anti-parallel
Strand 3	B	396	402	parallel
Strand 4	B	293	299	parallel
Strand 5	B	261	265	parallel
Strand 6	B	420	424	parallel
Strand 7	B	442	445	parallel
Strand 8	A	481	489	parallel
Strand 9	A	140	148	anti-parallel
Strand 10	A	130	137	anti-parallel
Strand 11	D	130	137	anti-parallel
Strand 12	D	140	148	anti-parallel
Strand 13	D	481	489	anti-parallel
Strand 14	C	442	445	parallel
Strand 15	C	420	424	parallel
Strand 16	C	261	265	parallel
Strand 17	C	293	299	parallel
Strand 18	C	396	402	parallel
Strand 19	C	376	379	parallel
Strand 20	C	354	357	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	178	182	parallel
Strand 3	A	151	155	parallel
Strand 4	A	227	233	parallel
Strand 5	A	252	256	parallel
Strand 6	A	465	466	anti-parallel

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There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	357	first strand
Strand 2	A	376	379	anti-parallel
Strand 3	A	396	402	parallel
Strand 4	A	293	299	parallel
Strand 5	A	261	265	parallel
Strand 6	A	420	424	parallel
Strand 7	A	442	445	parallel
Strand 8	B	481	489	parallel
Strand 9	B	140	148	anti-parallel
Strand 10	B	130	137	anti-parallel
Strand 11	C	130	137	anti-parallel
Strand 12	C	140	148	anti-parallel
Strand 13	C	481	489	anti-parallel
Strand 14	D	442	445	parallel
Strand 15	D	420	424	parallel
Strand 16	D	261	265	parallel
Strand 17	D	293	299	parallel
Strand 18	D	396	402	parallel
Strand 19	D	376	379	parallel
Strand 20	D	354	357	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	418	first strand
Strand 2	A	461	462	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	20	22	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	33	first strand
Strand 2	B	40	45	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	178	182	parallel
Strand 3	B	151	155	parallel
Strand 4	B	227	233	parallel
Strand 5	B	252	256	parallel
Strand 6	B	465	466	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	418	first strand
Strand 2	B	461	462	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	C	20	22	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	40	45	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	178	182	parallel
Strand 3	C	151	155	parallel
Strand 4	C	227	233	parallel
Strand 5	C	252	256	parallel
Strand 6	C	465	466	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	418	first strand
Strand 2	C	461	462	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	20	22	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	33	first strand
Strand 2	D	40	45	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	178	182	parallel
Strand 3	D	151	155	parallel
Strand 4	D	227	233	parallel
Strand 5	D	252	256	parallel
Strand 6	D	465	466	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	418	first strand
Strand 2	D	461	462	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q0D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q0D