Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q0X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q0X entry

There are 2 chains in PDB entry 9Q0X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 14GLU 847
B
 GLU 170ASP 843
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 9Q0X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
178 195Right-handed alpha
Helix 2
AA2
A
195 211Right-handed alpha
Helix 3
AA3
A
213 219Right-handed alpha
Helix 4
AA4
A
220 222Right-handed 310
Helix 5
AA5
A
224 241Right-handed alpha
Helix 6
AA6
A
265 277Right-handed alpha
Helix 7
AA7
A
279 294Right-handed alpha
Helix 8
AA8
A
295 297Right-handed 310
Helix 9
AA9
A
301 310Right-handed alpha
Helix 10
AB1
A
314 337Right-handed alpha
Helix 11
AB2
A
340 355Right-handed alpha
Helix 12
AB3
A
357 373Right-handed alpha
Helix 13
AB4
A
376 382Right-handed alpha
Helix 14
AB5
A
384 404Right-handed alpha
Helix 15
AB6
A
407 426Right-handed alpha
Helix 16
AB7
A
429 432Right-handed 310
Helix 17
AB8
A
433 446Right-handed alpha
Helix 18
AB9
A
451 495Right-handed alpha
Helix 19
AC1
A
497 516Right-handed alpha
Helix 20
AC2
A
521 535Right-handed alpha
Helix 21
AC3
A
541 545Right-handed 310
Helix 22
AC4
A
558 575Right-handed alpha
Helix 23
AC5
A
576 578Right-handed 310
Helix 24
AC6
A
623 635Right-handed alpha
Helix 25
AC7
A
679 686Right-handed 310
Helix 26
AC8
A
717 727Right-handed alpha
Helix 27
AC9
A
733 742Right-handed alpha
Helix 28
AD1
A
747 750Right-handed 310
Helix 29
AD2
A
751 771Right-handed alpha
Helix 30
AD3
A
777 795Right-handed alpha
Helix 31
AD4
A
836 842Right-handed alpha
Helix 32
AD5
B
178 194Right-handed alpha
Helix 33
AD6
B
195 211Right-handed alpha
Helix 34
AD7
B
213 219Right-handed alpha
Helix 35
AD8
B
220 223Right-handed 310
Helix 36
AD9
B
224 241Right-handed alpha
Helix 37
AE1
B
265 277Right-handed alpha
Helix 38
AE2
B
279 294Right-handed alpha
Helix 39
AE3
B
295 297Right-handed 310
Helix 40
AE4
B
301 310Right-handed alpha
Helix 41
AE5
B
314 337Right-handed alpha
Helix 42
AE6
B
340 352Right-handed alpha
Helix 43
AE7
B
358 373Right-handed alpha
Helix 44
AE8
B
374 377Right-handed 310
Helix 45
AE9
B
384 389Right-handed alpha
Helix 46
AF1
B
391 406Right-handed alpha
Helix 47
AF2
B
407 426Right-handed alpha
Helix 48
AF3
B
428 430Right-handed 310
Helix 49
AF4
B
431 447Right-handed alpha
Helix 50
AF5
B
451 495Right-handed alpha
Helix 51
AF6
B
497 516Right-handed alpha
Helix 52
AF7
B
521 535Right-handed alpha
Helix 53
AF8
B
540 548Right-handed 310
Helix 54
AF9
B
558 575Right-handed alpha
Helix 55
AG1
B
576 578Right-handed 310
Helix 56
AG2
B
621 623Right-handed 310
Helix 57
AG3
B
624 634Right-handed alpha
Helix 58
AG4
B
665 669Right-handed 310
Helix 59
AG5
B
679 686Right-handed 310
Helix 60
AG6
B
717 727Right-handed alpha
Helix 61
AG7
B
733 742Right-handed alpha
Helix 62
AG8
B
747 750Right-handed 310
Helix 63
AG9
B
751 771Right-handed alpha
Helix 64
AH1
B
777 795Right-handed alpha
Helix 65
AH2
B
836 841Right-handed alpha
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There are 13 sheets in PDB entry 9Q0X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
18 26anti-parallel
Strand 3
A
67 68anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
18 26anti-parallel
Strand 3
A
125 132anti-parallel
Strand 4
A
108 114anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 43first strand
Strand 2
A
73 81anti-parallel
Strand 3
A
90 95anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 552first strand
Strand 2
A
582 585parallel
Strand 3
A
712 713anti-parallel
Strand 4
A
694 695anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 599first strand
Strand 2
A
650 653anti-parallel
Strand 3
A
660 662anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 611first strand
Strand 2
A
617 619anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 673first strand
Strand 2
A
688 690anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
705 707first strand
Strand 2
A
699 702anti-parallel
Strand 3
A
830 832anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 552first strand
Strand 2
B
582 585parallel
Strand 3
B
712 713anti-parallel
Strand 4
B
694 695anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
598 599first strand
Strand 2
B
650 653anti-parallel
Strand 3
B
659 662anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
609 611first strand
Strand 2
B
617 619anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
671 673first strand
Strand 2
B
688 690anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
705 707first strand
Strand 2
B
698 702anti-parallel
Strand 3
B
830 833anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il