Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q12 entry

There are 6 chains in PDB entry 9Q12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 33 C 321
A
 CYS 7ASP 1132
D
 A 15 G 22
F
 ARG 18GLY 99
G
 GLU 36SER 125
C
 SER 90HIS 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 9Q12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 18Right-handed alpha
Helix 2
AA2
A
24 32Right-handed alpha
Helix 3
AA3
A
44 53Right-handed alpha
Helix 4
AA4
A
76 92Right-handed alpha
Helix 5
AA5
A
95 99Right-handed 310
Helix 6
AA6
A
125 133Right-handed alpha
Helix 7
AA7
A
135 145Right-handed alpha
Helix 8
AA8
A
145 156Right-handed alpha
Helix 9
AA9
A
174 178Right-handed 310
Helix 10
AB1
A
329 332Right-handed 310
Helix 11
AB2
A
345 350Right-handed alpha
Helix 12
AB3
A
355 366Right-handed alpha
Helix 13
AB4
A
383 388Right-handed alpha
Helix 14
AB5
A
389 401Right-handed alpha
Helix 15
AB6
A
404 413Right-handed alpha
Helix 16
AB7
A
445 453Right-handed alpha
Helix 17
AB8
A
457 473Right-handed alpha
Helix 18
AB9
A
474 479Right-handed alpha
Helix 19
AC1
A
480 496Right-handed alpha
Helix 20
AC2
A
505 510Right-handed alpha
Helix 21
AC3
A
517 521Right-handed 310
Helix 22
AC4
A
530 551Right-handed alpha
Helix 23
AC5
A
551 560Right-handed alpha
Helix 24
AC6
A
578 596Right-handed alpha
Helix 25
AC7
A
602 612Right-handed alpha
Helix 26
AC8
A
652 672Right-handed alpha
Helix 27
AC9
A
673 676Right-handed 310
Helix 28
AD1
A
682 698Right-handed alpha
Helix 29
AD2
A
715 720Right-handed alpha
Helix 30
AD3
A
721 731Right-handed alpha
Helix 31
AD4
A
765 769Right-handed 310
Helix 32
AD5
A
772 784Right-handed alpha
Helix 33
AD6
A
802 815Right-handed alpha
Helix 34
AD7
A
837 854Right-handed alpha
Helix 35
AD8
A
876 890Right-handed alpha
Helix 36
AD9
A
891 895Right-handed 310
Helix 37
AE1
A
899 902Right-handed 310
Helix 38
AE2
A
911 915Right-handed 310
Helix 39
AE3
A
946 950Right-handed 310
Helix 40
AE4
A
965 982Right-handed alpha
Helix 41
AE5
A
983 988Right-handed alpha
Helix 42
AE6
A
993 1017Right-handed alpha
Helix 43
AE7
A
1024 1027Right-handed 310
Helix 44
AE8
A
1028 1051Right-handed alpha
Helix 45
AE9
A
1066 1084Right-handed alpha
Helix 46
AF1
A
1085 1107Right-handed alpha
Helix 47
AF2
A
1108 1119Right-handed alpha
Helix 48
AF3
F
19 23Right-handed alpha
Helix 49
AF4
F
27 38Right-handed alpha
Helix 50
AF5
F
46 74Right-handed alpha
Helix 51
AF6
F
80 91Right-handed alpha
Helix 52
AF7
F
91 99Right-handed alpha
Helix 53
AF8
G
38 50Right-handed alpha
Helix 54
AF9
G
56 85Right-handed alpha
Helix 55
AG1
G
91 103Right-handed alpha
Helix 56
AG2
G
106 125Right-handed alpha
Helix 57
AG3
C
98 104Right-handed alpha
Helix 58
AG4
C
105 108Right-handed 310
Helix 59
AG5
C
134 138Right-handed 310
Helix 60
AG6
C
158 165Right-handed alpha
Helix 61
AG7
C
167 177Right-handed 310
Helix 62
AG8
C
227 239Right-handed alpha
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There are 10 sheets in PDB entry 9Q12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
54 58anti-parallel
Strand 3
A
157 162anti-parallel
Strand 4
A
166 171anti-parallel
Strand 5
A
789 801parallel
Strand 6
A
738 748anti-parallel
Strand 7
A
756 764anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
119 121anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
502 504anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 564first strand
Strand 2
A
574 577anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 600first strand
Strand 2
A
823 827anti-parallel
Strand 3
A
817 820anti-parallel
Strand 4
A
618 626parallel
Strand 5
A
629 636anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
862 865first strand
Strand 2
A
870 874anti-parallel
Strand 3
A
707 711anti-parallel
Strand 4
A
904 905anti-parallel
Strand 5
A
920 921parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
927 930first strand
Strand 2
A
933 936anti-parallel
Strand 3
A
942 944anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
43 44first strand
Strand 2
G
89 90parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
78 79first strand
Strand 2
G
54 55parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 122first strand
Strand 2
C
143 147anti-parallel
Strand 3
C
152 157anti-parallel
Strand 4
C
201 215parallel
Strand 5
C
180 192anti-parallel
Strand 6
C
113 122anti-parallel
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