Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q1E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q1E entry

There are 4 chains in PDB entry 9Q1E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 22	LEU 910
B	GLU 22	LEU 910
C	GLU 22	LEU 910
D	GLU 22	LEU 910

There are145 helices in PDB entry 9Q1E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	33	Right-handed alpha
Helix 2	AA2	A	50	58	Right-handed alpha
Helix 3	AA3	A	73	83	Right-handed alpha
Helix 4	AA4	A	84	101	Right-handed alpha
Helix 5	AA5	A	112	134	Right-handed alpha
Helix 6	AA6	A	187	191	Right-handed 310
Helix 7	AA7	A	267	300	Right-handed alpha
Helix 8	AA8	A	301	317	Right-handed alpha
Helix 9	AA9	A	320	326	Right-handed alpha
Helix 10	AB1	A	327	339	Right-handed alpha
Helix 11	AB2	A	345	354	Right-handed alpha
Helix 12	AB3	A	384	393	Right-handed alpha
Helix 13	AB4	A	403	413	Right-handed alpha
Helix 14	AB5	A	470	474	Right-handed 310
Helix 15	AB6	A	521	525	Right-handed 310
Helix 16	AB7	A	548	558	Right-handed alpha
Helix 17	AB8	A	569	581	Right-handed alpha
Helix 18	AB9	A	589	596	Right-handed alpha
Helix 19	AC1	A	597	608	Right-handed alpha
Helix 20	AC2	A	615	628	Right-handed alpha
Helix 21	AC3	A	643	649	Right-handed alpha
Helix 22	AC4	A	659	666	Right-handed alpha
Helix 23	AC5	A	676	715	Right-handed alpha
Helix 24	AC6	A	723	738	Right-handed alpha
Helix 25	AC7	A	739	744	Right-handed 310
Helix 26	AC8	A	747	753	Right-handed 310
Helix 27	AC9	A	758	787	Right-handed alpha
Helix 28	AD1	A	789	794	Right-handed alpha
Helix 29	AD2	A	803	828	Right-handed alpha
Helix 30	AD3	A	828	833	Right-handed alpha
Helix 31	AD4	A	845	862	Right-handed alpha
Helix 32	AD5	A	865	871	Right-handed alpha
Helix 33	AD6	A	879	907	Right-handed alpha
Helix 34	AD7	B	24	30	Right-handed alpha
Helix 35	AD8	B	35	41	Right-handed alpha
Helix 36	AD9	B	42	46	Right-handed 310
Helix 37	AE1	B	51	61	Right-handed alpha
Helix 38	AE2	B	73	83	Right-handed alpha
Helix 39	AE3	B	84	102	Right-handed alpha
Helix 40	AE4	B	112	133	Right-handed alpha
Helix 41	AE5	B	134	139	Right-handed alpha
Helix 42	AE6	B	141	145	Right-handed 310
Helix 43	AE7	B	251	260	Right-handed alpha
Helix 44	AE8	B	267	298	Right-handed alpha
Helix 45	AE9	B	301	317	Right-handed alpha
Helix 46	AF1	B	320	338	Right-handed alpha
Helix 47	AF2	B	345	347	Right-handed 310
Helix 48	AF3	B	348	354	Right-handed alpha
Helix 49	AF4	B	385	397	Right-handed alpha
Helix 50	AF5	B	403	418	Right-handed alpha
Helix 51	AF6	B	488	493	Right-handed alpha
Helix 52	AF7	B	499	506	Right-handed 310
Helix 53	AF8	B	518	523	Right-handed alpha
Helix 54	AF9	B	547	558	Right-handed alpha
Helix 55	AG1	B	569	580	Right-handed alpha
Helix 56	AG2	B	600	606	Right-handed alpha
Helix 57	AG3	B	615	629	Right-handed alpha
Helix 58	AG4	B	641	648	Right-handed alpha
Helix 59	AG5	B	659	665	Right-handed alpha
Helix 60	AG6	B	676	714	Right-handed alpha
Helix 61	AG7	B	723	738	Right-handed alpha
Helix 62	AG8	B	739	744	Right-handed 310
Helix 63	AG9	B	747	751	Right-handed 310
Helix 64	AH1	B	758	770	Right-handed alpha
Helix 65	AH2	B	770	787	Right-handed alpha
Helix 66	AH3	B	788	793	Right-handed alpha
Helix 67	AH4	B	803	828	Right-handed alpha
Helix 68	AH5	B	828	833	Right-handed alpha
Helix 69	AH6	B	845	862	Right-handed alpha
Helix 70	AH7	B	865	872	Right-handed alpha
Helix 71	AH8	B	879	907	Right-handed alpha
Helix 72	AH9	C	23	32	Right-handed alpha
Helix 73	AI1	C	34	43	Right-handed alpha
Helix 74	AI2	C	56	61	Right-handed alpha
Helix 75	AI3	C	73	82	Right-handed alpha
Helix 76	AI4	C	84	102	Right-handed alpha
Helix 77	AI5	C	113	132	Right-handed alpha
Helix 78	AI6	C	166	168	Right-handed 310
Helix 79	AI7	C	198	203	Right-handed alpha
Helix 80	AI8	C	251	259	Right-handed alpha
Helix 81	AI9	C	266	300	Right-handed alpha
Helix 82	AJ1	C	301	317	Right-handed alpha
Helix 83	AJ2	C	320	338	Right-handed alpha
Helix 84	AJ3	C	347	354	Right-handed alpha
Helix 85	AJ4	C	384	396	Right-handed alpha
Helix 86	AJ5	C	403	416	Right-handed alpha
Helix 87	AJ6	C	491	495	Right-handed 310
Helix 88	AJ7	C	499	505	Right-handed alpha
Helix 89	AJ8	C	527	532	Right-handed 310
Helix 90	AJ9	C	552	558	Right-handed alpha
Helix 91	AK1	C	569	581	Right-handed alpha
Helix 92	AK2	C	589	594	Right-handed alpha
Helix 93	AK3	C	600	608	Right-handed alpha
Helix 94	AK4	C	618	629	Right-handed alpha
Helix 95	AK5	C	641	648	Right-handed alpha
Helix 96	AK6	C	676	693	Right-handed alpha
Helix 97	AK7	C	695	713	Right-handed alpha
Helix 98	AK8	C	723	738	Right-handed alpha
Helix 99	AK9	C	739	744	Right-handed 310
Helix 100	AL1	C	747	751	Right-handed 310
Helix 101	AL2	C	758	770	Right-handed alpha
Helix 102	AL3	C	770	775	Right-handed alpha
Helix 103	AL4	C	789	794	Right-handed alpha
Helix 104	AL5	C	803	828	Right-handed alpha
Helix 105	AL6	C	828	833	Right-handed alpha
Helix 106	AL7	C	845	862	Right-handed alpha
Helix 107	AL8	C	865	870	Right-handed alpha
Helix 108	AL9	C	877	879	Right-handed 310
Helix 109	AM1	C	880	907	Right-handed alpha
Helix 110	AM2	D	36	42	Right-handed alpha
Helix 111	AM3	D	51	61	Right-handed alpha
Helix 112	AM4	D	84	102	Right-handed alpha
Helix 113	AM5	D	112	134	Right-handed alpha
Helix 114	AM6	D	252	259	Right-handed 310
Helix 115	AM7	D	268	300	Right-handed alpha
Helix 116	AM8	D	301	317	Right-handed alpha
Helix 117	AM9	D	320	326	Right-handed alpha
Helix 118	AN1	D	328	338	Right-handed alpha
Helix 119	AN2	D	347	354	Right-handed alpha
Helix 120	AN3	D	361	366	Right-handed alpha
Helix 121	AN4	D	385	392	Right-handed alpha
Helix 122	AN5	D	393	398	Right-handed alpha
Helix 123	AN6	D	403	417	Right-handed alpha
Helix 124	AN7	D	484	487	Right-handed 310
Helix 125	AN8	D	488	500	Right-handed alpha
Helix 126	AN9	D	520	524	Right-handed 310
Helix 127	AO1	D	526	530	Right-handed 310
Helix 128	AO2	D	548	558	Right-handed alpha
Helix 129	AO3	D	592	597	Right-handed alpha
Helix 130	AO4	D	598	605	Right-handed alpha
Helix 131	AO5	D	615	623	Right-handed alpha
Helix 132	AO6	D	626	630	Right-handed 310
Helix 133	AO7	D	642	649	Right-handed alpha
Helix 134	AO8	D	659	666	Right-handed alpha
Helix 135	AO9	D	676	714	Right-handed alpha
Helix 136	AP1	D	723	738	Right-handed alpha
Helix 137	AP2	D	739	744	Right-handed 310
Helix 138	AP3	D	747	751	Right-handed 310
Helix 139	AP4	D	758	787	Right-handed alpha
Helix 140	AP5	D	788	793	Right-handed alpha
Helix 141	AP6	D	804	828	Right-handed alpha
Helix 142	AP7	D	828	833	Right-handed alpha
Helix 143	AP8	D	845	862	Right-handed alpha
Helix 144	AP9	D	865	871	Right-handed alpha
Helix 145	AQ1	D	879	907	Right-handed alpha

There are 12 sheets in PDB entry 9Q1E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	668	670	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	610	611	first strand
Strand 2	A	561	565	parallel
Strand 3	A	357	361	parallel
Strand 4	A	633	636	parallel
Strand 5	A	652	653	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	243	244	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	B	207	209	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	668	670	anti-parallel
Strand 3	B	652	654	parallel
Strand 4	B	633	636	parallel
Strand 5	B	357	360	parallel
Strand 6	B	561	565	parallel
Strand 7	B	610	611	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	511	first strand
Strand 2	B	537	540	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	161	164	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	241	243	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	343	first strand
Strand 2	C	668	670	anti-parallel
Strand 3	C	651	654	parallel
Strand 4	C	633	637	parallel
Strand 5	C	357	360	parallel
Strand 6	C	561	564	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	449	first strand
Strand 2	C	461	462	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	509	512	first strand
Strand 2	C	536	539	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	343	first strand
Strand 2	D	668	670	anti-parallel
Strand 3	D	652	654	parallel
Strand 4	D	633	637	parallel
Strand 5	D	357	360	parallel
Strand 6	D	561	565	parallel
Strand 7	D	610	611	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q1E

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q1E