Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q1F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q1F entry

There are 2 chains in PDB entry 9Q1F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -16LEU 359
B
 MET -16GLN 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 9Q1F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-15 -6Right-handed alpha
Helix 2
AA2
A
21 34Right-handed alpha
Helix 3
AA3
A
42 63Right-handed alpha
Helix 4
AA4
A
67 74Right-handed alpha
Helix 5
AA5
A
75 90Right-handed alpha
Helix 6
AA6
A
90 96Right-handed alpha
Helix 7
AA7
A
97 106Right-handed alpha
Helix 8
AA8
A
108 117Right-handed alpha
Helix 9
AA9
A
119 125Right-handed alpha
Helix 10
AB1
A
125 139Right-handed alpha
Helix 11
AB2
A
141 145Right-handed 310
Helix 12
AB3
A
152 165Right-handed alpha
Helix 13
AB4
A
165 171Right-handed alpha
Helix 14
AB5
A
174 178Right-handed 310
Helix 15
AB6
A
196 204Right-handed alpha
Helix 16
AB7
A
232 237Right-handed alpha
Helix 17
AB8
A
292 300Right-handed alpha
Helix 18
AB9
A
304 326Right-handed alpha
Helix 19
AC1
A
340 359Right-handed alpha
Helix 20
AC2
B
-15 -6Right-handed alpha
Helix 21
AC3
B
21 34Right-handed alpha
Helix 22
AC4
B
42 63Right-handed alpha
Helix 23
AC5
B
67 74Right-handed alpha
Helix 24
AC6
B
75 90Right-handed alpha
Helix 25
AC7
B
90 96Right-handed alpha
Helix 26
AC8
B
97 106Right-handed alpha
Helix 27
AC9
B
108 117Right-handed alpha
Helix 28
AD1
B
119 125Right-handed alpha
Helix 29
AD2
B
125 139Right-handed alpha
Helix 30
AD3
B
152 165Right-handed alpha
Helix 31
AD4
B
165 173Right-handed alpha
Helix 32
AD5
B
232 237Right-handed alpha
Helix 33
AD6
B
292 300Right-handed alpha
Helix 34
AD7
B
304 325Right-handed alpha
Helix 35
AD8
B
340 360Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9Q1F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-3 2first strand
Strand 2
A
8 11anti-parallel
Strand 3
A
14 17anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
244 251anti-parallel
Strand 3
A
269 275anti-parallel
Strand 4
A
284 291anti-parallel
Strand 5
A
208 209parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
244 251anti-parallel
Strand 3
A
269 275anti-parallel
Strand 4
A
284 291anti-parallel
Strand 5
A
213 218parallel
Strand 6
A
333 338parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 258first strand
Strand 2
A
261 266anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-3 2first strand
Strand 2
B
8 11anti-parallel
Strand 3
B
14 17anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
244 251anti-parallel
Strand 3
B
269 275anti-parallel
Strand 4
B
284 291anti-parallel
Strand 5
B
208 209parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
244 251anti-parallel
Strand 3
B
269 275anti-parallel
Strand 4
B
284 291anti-parallel
Strand 5
B
213 218parallel
Strand 6
B
333 338parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 258first strand
Strand 2
B
261 266anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il