Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q1T entry

There is 1 chain in PDB entry 9Q1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 633
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9Q1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 35Right-handed alpha
Helix 2
AA2
A
36 49Right-handed alpha
Helix 3
AA3
A
99 107Right-handed alpha
Helix 4
AA4
A
143 155Right-handed alpha
Helix 5
AA5
A
169 174Right-handed alpha
Helix 6
AA6
A
193 201Right-handed alpha
Helix 7
AA7
A
219 237Right-handed alpha
Helix 8
AA8
A
245 251Right-handed alpha
Helix 9
AA9
A
252 254Right-handed 310
Helix 10
AB1
A
255 263Right-handed alpha
Helix 11
AB2
A
274 283Right-handed alpha
Helix 12
AB3
A
287 291Right-handed 310
Helix 13
AB4
A
292 300Right-handed alpha
Helix 14
AB5
A
337 345Right-handed alpha
Helix 15
AB6
A
346 349Right-handed 310
Helix 16
AB7
A
352 367Right-handed alpha
Helix 17
AB8
A
369 386Right-handed alpha
Helix 18
AB9
A
400 413Right-handed alpha
Helix 19
AC1
A
416 423Right-handed alpha
Helix 20
AC2
A
424 433Right-handed alpha
Helix 21
AC3
A
435 439Right-handed 310
Helix 22
AC4
A
455 465Right-handed alpha
Helix 23
AC5
A
476 481Right-handed alpha
Helix 24
AC6
A
495 511Right-handed alpha
Helix 25
AC7
A
516 522Right-handed 310
Helix 26
AC8
A
524 537Right-handed alpha
Helix 27
AC9
A
541 563Right-handed alpha
Helix 28
AD1
A
566 570Right-handed 310
Helix 29
AD2
A
573 577Right-handed 310
Helix 30
AD3
A
586 590Right-handed 310
Helix 31
AD4
A
595 608Right-handed alpha
Helix 32
AD5
A
615 622Right-handed alpha
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There are 4 sheets in PDB entry 9Q1T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
11 15anti-parallel
Strand 3
A
111 115parallel
Strand 4
A
61 64anti-parallel
Strand 5
A
79 84anti-parallel
Strand 6
A
91 96anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
122 127anti-parallel
Strand 3
A
203 209parallel
Strand 4
A
163 167anti-parallel
Strand 5
A
181 183anti-parallel
Strand 6
A
188 189anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
317 324anti-parallel
Strand 3
A
327 333anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
445 446anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il