Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q1Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q1Z entry

There are 6 chains in PDB entry 9Q1Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	SER 125
B	ARG 22	GLY 133
C	VAL 2	SER 125
D	SER 189	SER 605
E	ARG 22	GLY 133
F	SER 189	VAL 604

There are 18 helices in PDB entry 9Q1Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	31	Right-handed alpha
Helix 2	AA2	A	107	111	Right-handed 310
Helix 3	AA3	C	27	31	Right-handed 310
Helix 4	AA4	C	87	91	Right-handed 310
Helix 5	AA5	C	107	110	Right-handed 310
Helix 6	AA6	D	204	212	Right-handed alpha
Helix 7	AA7	D	373	376	Right-handed 310
Helix 8	AA8	D	378	386	Right-handed alpha
Helix 9	AA9	D	387	389	Right-handed 310
Helix 10	AB1	D	390	395	Right-handed alpha
Helix 11	AB2	D	399	404	Right-handed alpha
Helix 12	AB3	D	545	548	Right-handed 310
Helix 13	AB4	F	204	212	Right-handed alpha
Helix 14	AB5	F	373	376	Right-handed 310
Helix 15	AB6	F	379	387	Right-handed alpha
Helix 16	AB7	F	390	395	Right-handed alpha
Helix 17	AB8	F	488	491	Right-handed 310
Helix 18	AB9	F	545	548	Right-handed 310

There are 25 sheets in PDB entry 9Q1Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	119	123	parallel
Strand 3	A	92	100	anti-parallel
Strand 4	A	32	39	anti-parallel
Strand 5	A	45	52	anti-parallel
Strand 6	A	57	60	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	127	131	parallel
Strand 3	B	108	115	anti-parallel
Strand 4	B	57	61	anti-parallel
Strand 5	B	68	71	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	127	131	parallel
Strand 3	B	108	115	anti-parallel
Strand 4	B	120	122	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	93	98	anti-parallel
Strand 3	B	85	90	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	45	52	anti-parallel
Strand 6	C	57	60	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	112	115	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	21	first strand
Strand 2	C	78	83	anti-parallel
Strand 3	C	68	73	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	194	first strand
Strand 2	D	594	602	anti-parallel
Strand 3	D	577	586	anti-parallel
Strand 4	D	562	572	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	224	first strand
Strand 2	D	227	236	anti-parallel
Strand 3	D	250	261	anti-parallel
Strand 4	D	269	279	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	307	first strand
Strand 2	D	346	350	anti-parallel
Strand 3	D	363	371	anti-parallel
Strand 4	D	353	358	anti-parallel
Strand 5	D	408	415	first strand
Strand 6	D	425	430	anti-parallel
Strand 7	D	339	340	parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	335	first strand
Strand 2	D	320	325	anti-parallel
Strand 3	D	295	301	anti-parallel
Strand 4	D	286	291	anti-parallel
Strand 5	D	353	358	parallel
Strand 6	D	363	371	anti-parallel
Strand 7	D	440	445	first strand
Strand 8	D	452	456	anti-parallel
Strand 9	D	466	471	anti-parallel
Strand 10	D	477	482	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	484	486	first strand
Strand 2	D	495	497	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	508	511	first strand
Strand 2	D	528	530	anti-parallel
Strand 3	D	537	544	anti-parallel
Strand 4	D	524	525	anti-parallel
Strand 5	D	515	516	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	508	511	first strand
Strand 2	D	528	530	anti-parallel
Strand 3	D	537	544	anti-parallel
Strand 4	D	549	556	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	33	first strand
Strand 2	E	127	131	parallel
Strand 3	E	108	115	anti-parallel
Strand 4	E	57	61	anti-parallel
Strand 5	E	68	71	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	33	first strand
Strand 2	E	127	131	parallel
Strand 3	E	108	115	anti-parallel
Strand 4	E	120	122	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	44	first strand
Strand 2	E	93	98	anti-parallel
Strand 3	E	85	89	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	192	193	first strand
Strand 2	F	594	602	anti-parallel
Strand 3	F	577	586	anti-parallel
Strand 4	F	562	572	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	224	first strand
Strand 2	F	227	236	anti-parallel
Strand 3	F	250	261	anti-parallel
Strand 4	F	269	279	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	305	307	first strand
Strand 2	F	346	350	anti-parallel
Strand 3	F	362	371	anti-parallel
Strand 4	F	354	359	anti-parallel
Strand 5	F	409	416	first strand
Strand 6	F	425	430	anti-parallel
Strand 7	F	339	341	parallel

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There are 10 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	333	335	first strand
Strand 2	F	320	325	anti-parallel
Strand 3	F	295	300	anti-parallel
Strand 4	F	287	292	anti-parallel
Strand 5	F	354	359	parallel
Strand 6	F	362	371	anti-parallel
Strand 7	F	441	445	first strand
Strand 8	F	451	456	anti-parallel
Strand 9	F	466	471	anti-parallel
Strand 10	F	477	482	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	484	486	first strand
Strand 2	F	495	497	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	508	511	first strand
Strand 2	F	524	530	anti-parallel
Strand 3	F	515	516	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	508	511	first strand
Strand 2	F	524	530	anti-parallel
Strand 3	F	537	544	anti-parallel
Strand 4	F	549	550	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q1Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q1Z