Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q24

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q24 entry

There are 10 chains in PDB entry 9Q24 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 2	SER 131
C	GLU 1	ILE 107
D	VAL 1	VAL 118
E	MET 1	LYS 109
G	GLN 1	SER 131
H	GLU 1	ILE 107
I	VAL 1	VAL 118
J	MET 1	LYS 109
A	CYS 188	THR 607
F	CYS 188	VAL 608

There are 18 helices in PDB entry 9Q24. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	87	91	Right-handed 310
Helix 2	AA2	C	79	83	Right-handed 310
Helix 3	AA3	D	27	31	Right-handed 310
Helix 4	AA4	D	63	66	Right-handed 310
Helix 5	AA5	D	88	92	Right-handed 310
Helix 6	AA6	H	79	83	Right-handed 310
Helix 7	AA7	I	27	31	Right-handed 310
Helix 8	AA8	A	204	212	Right-handed alpha
Helix 9	AA9	A	373	378	Right-handed alpha
Helix 10	AB1	A	378	386	Right-handed alpha
Helix 11	AB2	A	390	395	Right-handed alpha
Helix 12	AB3	A	401	405	Right-handed 310
Helix 13	AB4	F	204	212	Right-handed alpha
Helix 14	AB5	F	373	378	Right-handed alpha
Helix 15	AB6	F	378	384	Right-handed alpha
Helix 16	AB7	F	390	396	Right-handed alpha
Helix 17	AB8	F	399	404	Right-handed alpha
Helix 18	AB9	F	488	491	Right-handed 310

There are 34 sheets in PDB entry 9Q24. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	20	25	anti-parallel
Strand 3	B	78	81	anti-parallel
Strand 4	B	70	72	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	128	130	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	46	52	anti-parallel
Strand 3	B	33	38	anti-parallel
Strand 4	B	95	99	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	A	192	193	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	48	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	6	first strand
Strand 2	D	16	24	anti-parallel
Strand 3	D	79	85	anti-parallel
Strand 4	D	69	74	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	61	first strand
Strand 2	D	44	50	anti-parallel
Strand 3	D	33	38	anti-parallel
Strand 4	D	94	98	anti-parallel
Strand 5	D	114	115	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	4	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	72	77	anti-parallel
Strand 4	E	64	69	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	9	first strand
Strand 2	E	103	107	parallel
Strand 3	E	87	91	anti-parallel
Strand 4	E	36	40	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	51	first strand
Strand 2	E	55	56	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	17	25	anti-parallel
Strand 3	G	78	84	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	129	130	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	49	52	anti-parallel
Strand 3	G	33	37	anti-parallel
Strand 4	G	95	99	anti-parallel
Strand 5	G	119	122	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	22	24	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	67	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	102	104	parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	45	48	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	6	first strand
Strand 2	I	16	24	anti-parallel
Strand 3	I	79	85	anti-parallel
Strand 4	I	69	74	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	46	first strand
Strand 2	I	36	38	anti-parallel
Strand 3	I	94	96	anti-parallel
Strand 4	I	114	115	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	49	first strand
Strand 2	I	60	61	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	4	first strand
Strand 2	J	16	21	anti-parallel
Strand 3	J	72	77	anti-parallel
Strand 4	J	64	69	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	7	10	first strand
Strand 2	J	104	108	parallel
Strand 3	J	87	91	anti-parallel
Strand 4	J	36	40	anti-parallel
Strand 5	J	47	51	anti-parallel
Strand 6	J	55	56	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	593	603	anti-parallel
Strand 3	A	577	586	anti-parallel
Strand 4	A	562	572	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	224	first strand
Strand 2	A	227	234	anti-parallel
Strand 3	A	252	261	anti-parallel
Strand 4	A	269	278	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	346	350	anti-parallel
Strand 3	A	362	371	anti-parallel
Strand 4	A	354	359	anti-parallel
Strand 5	A	441	445	parallel
Strand 6	A	452	456	anti-parallel
Strand 7	A	466	471	anti-parallel
Strand 8	A	477	482	anti-parallel

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There are 14 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	346	350	anti-parallel
Strand 3	A	362	371	anti-parallel
Strand 4	A	408	416	anti-parallel
Strand 5	A	425	430	anti-parallel
Strand 6	A	333	339	parallel
Strand 7	A	317	323	anti-parallel
Strand 8	A	295	300	anti-parallel
Strand 9	A	288	292	anti-parallel
Strand 10	A	354	359	parallel
Strand 11	A	441	445	parallel
Strand 12	A	452	456	anti-parallel
Strand 13	A	466	471	anti-parallel
Strand 14	A	477	482	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	486	first strand
Strand 2	A	495	497	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	523	530	anti-parallel
Strand 3	A	537	543	anti-parallel
Strand 4	A	551	556	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	199	first strand
Strand 2	F	594	603	anti-parallel
Strand 3	F	576	585	anti-parallel
Strand 4	F	563	573	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	223	first strand
Strand 2	F	228	235	anti-parallel
Strand 3	F	252	261	anti-parallel
Strand 4	F	269	279	anti-parallel

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There are 13 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	477	482	first strand
Strand 2	F	466	471	anti-parallel
Strand 3	F	451	456	anti-parallel
Strand 4	F	440	445	anti-parallel
Strand 5	F	353	359	parallel
Strand 6	F	362	370	anti-parallel
Strand 7	F	408	416	anti-parallel
Strand 8	F	425	430	anti-parallel
Strand 9	F	333	339	parallel
Strand 10	F	317	323	anti-parallel
Strand 11	F	295	300	anti-parallel
Strand 12	F	288	292	anti-parallel
Strand 13	F	353	359	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	305	307	first strand
Strand 2	F	348	350	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	484	486	first strand
Strand 2	F	495	497	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	510	511	first strand
Strand 2	F	523	530	anti-parallel
Strand 3	F	515	517	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	510	511	first strand
Strand 2	F	523	530	anti-parallel
Strand 3	F	537	543	anti-parallel
Strand 4	F	552	556	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q24

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q24