Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q29

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q29 entry

There are 10 chains in PDB entry 9Q29 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 10	ASP 348
D	GLY 2	GLY 315
G	PRO 22	ASP 339
H	T 4	T 29
I	GLN 23	ASP 336
J	PRO 22	LYS 338
K	PRO 22	LYS 338
L	PRO 22	LYS 338
R	ASP 2	HIS 346
X	SER 22	CYS 280

There are136 helices in PDB entry 9Q29. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	13	17	Right-handed 310
Helix 2	AA2	C	20	30	Right-handed alpha
Helix 3	AA3	C	34	38	Right-handed 310
Helix 4	AA4	C	42	51	Right-handed alpha
Helix 5	AA5	C	53	68	Right-handed alpha
Helix 6	AA6	C	87	97	Right-handed alpha
Helix 7	AA7	C	104	112	Right-handed alpha
Helix 8	AA8	C	130	142	Right-handed alpha
Helix 9	AA9	C	143	144	Right-handed 310
Helix 10	AB1	C	145	149	Right-handed 310
Helix 11	AB2	C	165	188	Right-handed alpha
Helix 12	AB3	C	189	197	Right-handed alpha
Helix 13	AB4	C	200	207	Right-handed alpha
Helix 14	AB5	C	215	233	Right-handed alpha
Helix 15	AB6	C	246	250	Right-handed 310
Helix 16	AB7	C	254	276	Right-handed alpha
Helix 17	AB8	C	303	308	Right-handed 310
Helix 18	AB9	D	13	23	Right-handed alpha
Helix 19	AC1	D	27	34	Right-handed alpha
Helix 20	AC2	D	35	44	Right-handed alpha
Helix 21	AC3	D	46	61	Right-handed alpha
Helix 22	AC4	D	68	79	Right-handed alpha
Helix 23	AC5	D	86	93	Right-handed alpha
Helix 24	AC6	D	112	127	Right-handed alpha
Helix 25	AC7	D	142	152	Right-handed alpha
Helix 26	AC8	D	156	166	Right-handed alpha
Helix 27	AC9	D	174	193	Right-handed alpha
Helix 28	AD1	D	207	213	Right-handed alpha
Helix 29	AD2	D	220	240	Right-handed alpha
Helix 30	AD3	D	265	270	Right-handed alpha
Helix 31	AD4	G	24	32	Right-handed 310
Helix 32	AD5	G	34	44	Right-handed alpha
Helix 33	AD6	G	48	54	Right-handed alpha
Helix 34	AD7	G	56	61	Right-handed alpha
Helix 35	AD8	G	67	81	Right-handed alpha
Helix 36	AD9	G	89	96	Right-handed alpha
Helix 37	AE1	G	106	114	Right-handed alpha
Helix 38	AE2	G	132	144	Right-handed alpha
Helix 39	AE3	G	145	146	Right-handed 310
Helix 40	AE4	G	147	151	Right-handed 310
Helix 41	AE5	G	167	179	Right-handed alpha
Helix 42	AE6	G	181	188	Right-handed alpha
Helix 43	AE7	G	196	214	Right-handed alpha
Helix 44	AE8	G	227	232	Right-handed alpha
Helix 45	AE9	G	234	236	Right-handed 310
Helix 46	AF1	G	237	260	Right-handed alpha
Helix 47	AF2	G	288	296	Right-handed alpha
Helix 48	AF3	I	26	31	Right-handed alpha
Helix 49	AF4	I	34	44	Right-handed alpha
Helix 50	AF5	I	48	55	Right-handed alpha
Helix 51	AF6	I	56	62	Right-handed alpha
Helix 52	AF7	I	67	82	Right-handed alpha
Helix 53	AF8	I	89	98	Right-handed alpha
Helix 54	AF9	I	106	114	Right-handed alpha
Helix 55	AG1	I	132	144	Right-handed alpha
Helix 56	AG2	I	145	146	Right-handed 310
Helix 57	AG3	I	147	151	Right-handed 310
Helix 58	AG4	I	167	179	Right-handed alpha
Helix 59	AG5	I	181	188	Right-handed alpha
Helix 60	AG6	I	196	214	Right-handed alpha
Helix 61	AG7	I	234	236	Right-handed 310
Helix 62	AG8	I	237	260	Right-handed alpha
Helix 63	AG9	I	288	296	Right-handed alpha
Helix 64	AH1	J	24	31	Right-handed 310
Helix 65	AH2	J	34	45	Right-handed alpha
Helix 66	AH3	J	48	55	Right-handed alpha
Helix 67	AH4	J	56	62	Right-handed alpha
Helix 68	AH5	J	67	82	Right-handed alpha
Helix 69	AH6	J	89	98	Right-handed alpha
Helix 70	AH7	J	106	114	Right-handed alpha
Helix 71	AH8	J	132	144	Right-handed alpha
Helix 72	AH9	J	147	151	Right-handed 310
Helix 73	AI1	J	167	179	Right-handed alpha
Helix 74	AI2	J	181	187	Right-handed alpha
Helix 75	AI3	J	196	214	Right-handed alpha
Helix 76	AI4	J	227	232	Right-handed alpha
Helix 77	AI5	J	237	260	Right-handed alpha
Helix 78	AI6	J	289	296	Right-handed alpha
Helix 79	AI7	K	24	31	Right-handed 310
Helix 80	AI8	K	34	45	Right-handed alpha
Helix 81	AI9	K	48	54	Right-handed alpha
Helix 82	AJ1	K	56	62	Right-handed alpha
Helix 83	AJ2	K	67	82	Right-handed alpha
Helix 84	AJ3	K	89	98	Right-handed alpha
Helix 85	AJ4	K	106	114	Right-handed alpha
Helix 86	AJ5	K	132	144	Right-handed alpha
Helix 87	AJ6	K	145	146	Right-handed 310
Helix 88	AJ7	K	147	151	Right-handed 310
Helix 89	AJ8	K	167	179	Right-handed alpha
Helix 90	AJ9	K	181	187	Right-handed alpha
Helix 91	AK1	K	196	214	Right-handed alpha
Helix 92	AK2	K	227	232	Right-handed alpha
Helix 93	AK3	K	237	260	Right-handed alpha
Helix 94	AK4	K	289	296	Right-handed alpha
Helix 95	AK5	L	27	31	Right-handed 310
Helix 96	AK6	L	34	45	Right-handed alpha
Helix 97	AK7	L	48	54	Right-handed alpha
Helix 98	AK8	L	56	62	Right-handed alpha
Helix 99	AK9	L	67	82	Right-handed alpha
Helix 100	AL1	L	89	98	Right-handed alpha
Helix 101	AL2	L	106	114	Right-handed alpha
Helix 102	AL3	L	132	144	Right-handed alpha
Helix 103	AL4	L	147	151	Right-handed 310
Helix 104	AL5	L	167	179	Right-handed alpha
Helix 105	AL6	L	181	187	Right-handed alpha
Helix 106	AL7	L	196	214	Right-handed alpha
Helix 107	AL8	L	225	232	Right-handed alpha
Helix 108	AL9	L	237	260	Right-handed alpha
Helix 109	AM1	L	289	296	Right-handed alpha
Helix 110	AM2	R	2	6	Right-handed 310
Helix 111	AM3	R	9	19	Right-handed alpha
Helix 112	AM4	R	23	30	Right-handed alpha
Helix 113	AM5	R	31	40	Right-handed alpha
Helix 114	AM6	R	42	59	Right-handed alpha
Helix 115	AM7	R	65	71	Right-handed alpha
Helix 116	AM8	R	75	80	Right-handed alpha
Helix 117	AM9	R	86	94	Right-handed alpha
Helix 118	AN1	R	112	124	Right-handed alpha
Helix 119	AN2	R	125	126	Right-handed 310
Helix 120	AN3	R	127	131	Right-handed 310
Helix 121	AN4	R	147	162	Right-handed alpha
Helix 122	AN5	R	166	172	Right-handed alpha
Helix 123	AN6	R	174	178	Right-handed alpha
Helix 124	AN7	R	186	204	Right-handed alpha
Helix 125	AN8	R	215	223	Right-handed alpha
Helix 126	AN9	R	227	250	Right-handed alpha
Helix 127	AO1	R	284	290	Right-handed alpha
Helix 128	AO2	X	53	67	Right-handed alpha
Helix 129	AO3	X	68	72	Right-handed 310
Helix 130	AO4	X	88	99	Right-handed alpha
Helix 131	AO5	X	104	113	Right-handed alpha
Helix 132	AO6	X	122	140	Right-handed alpha
Helix 133	AO7	X	150	153	Right-handed 310
Helix 134	AO8	X	154	162	Right-handed alpha
Helix 135	AO9	X	165	188	Right-handed alpha
Helix 136	AP1	X	228	235	Right-handed alpha

There are 20 sheets in PDB entry 9Q29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	D	167	171	anti-parallel
Strand 3	D	131	136	parallel
Strand 4	D	200	206	parallel
Strand 5	D	244	249	parallel
Strand 6	D	102	106	parallel
Strand 7	D	274	277	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	115	116	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	299	first strand
Strand 2	C	279	291	anti-parallel
Strand 3	C	120	125	parallel
Strand 4	C	311	318	parallel
Strand 5	C	321	328	anti-parallel
Strand 6	C	336	342	anti-parallel
Strand 7	C	345	347	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	299	first strand
Strand 2	C	279	291	anti-parallel
Strand 3	C	236	242	parallel
Strand 4	C	154	159	parallel
Strand 5	C	208	212	parallel
Strand 6	R	63	64	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	X	115	119	anti-parallel
Strand 3	X	77	82	parallel
Strand 4	X	143	149	parallel
Strand 5	X	190	194	parallel
Strand 6	X	43	47	parallel
Strand 7	X	237	243	parallel
Strand 8	X	252	259	anti-parallel
Strand 9	X	265	273	anti-parallel
Strand 10	X	276	279	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	82	first strand
Strand 2	D	97	98	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	253	first strand
Strand 2	D	260	262	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	294	first strand
Strand 2	D	306	309	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	88	first strand
Strand 2	R	179	183	anti-parallel
Strand 3	R	136	141	parallel
Strand 4	R	207	213	parallel
Strand 5	R	253	257	parallel
Strand 6	R	102	107	parallel
Strand 7	R	294	299	parallel
Strand 8	R	313	319	anti-parallel
Strand 9	R	327	332	anti-parallel
Strand 10	R	337	339	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	333	336	first strand
Strand 2	G	324	330	anti-parallel
Strand 3	G	309	316	anti-parallel
Strand 4	G	298	304	anti-parallel
Strand 5	G	122	127	parallel
Strand 6	G	262	267	parallel
Strand 7	G	216	222	parallel
Strand 8	G	156	161	parallel
Strand 9	G	189	193	parallel
Strand 10	I	87	88	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	271	first strand
Strand 2	G	284	286	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	101	102	first strand
Strand 2	I	117	118	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	324	326	first strand
Strand 2	I	311	316	anti-parallel
Strand 3	I	298	302	anti-parallel
Strand 4	I	122	127	parallel
Strand 5	I	262	267	parallel
Strand 6	I	216	222	parallel
Strand 7	I	156	161	parallel
Strand 8	I	189	193	parallel
Strand 9	J	87	88	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	269	271	first strand
Strand 2	I	284	286	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	328	330	first strand
Strand 2	I	333	335	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	333	335	first strand
Strand 2	J	324	330	anti-parallel
Strand 3	J	309	315	anti-parallel
Strand 4	J	298	304	anti-parallel
Strand 5	J	122	127	parallel
Strand 6	J	262	267	parallel
Strand 7	J	216	222	parallel
Strand 8	J	156	161	parallel
Strand 9	J	189	193	parallel
Strand 10	K	87	88	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	333	335	first strand
Strand 2	K	324	330	anti-parallel
Strand 3	K	309	315	anti-parallel
Strand 4	K	298	304	anti-parallel
Strand 5	K	122	127	parallel
Strand 6	K	262	267	parallel
Strand 7	K	216	222	parallel
Strand 8	K	156	161	parallel
Strand 9	K	189	193	parallel
Strand 10	L	87	88	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	190	193	first strand
Strand 2	L	156	161	parallel
Strand 3	L	216	222	parallel
Strand 4	L	262	267	parallel
Strand 5	L	122	127	parallel
Strand 6	L	298	302	parallel
Strand 7	L	309	315	anti-parallel
Strand 8	L	324	330	anti-parallel
Strand 9	L	333	335	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	81	82	first strand
Strand 2	R	97	98	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	259	261	first strand
Strand 2	R	280	282	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q29

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q29