Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q2C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q2C entry

There are 8 chains in PDB entry 9Q2C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	PHE 80	GLU 400
A	MET 1	ILE 354
B	MET 14	ALA 460
E	MET 1	ARG 150
F	ASP 4	GLU 223
D	MET 1	ALA 239
C	MET 1	PHE 212
H	T 2	T 10

There are 82 helices in PDB entry 9Q2C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	82	86	Right-handed 310
Helix 2	AA2	G	92	102	Right-handed alpha
Helix 3	AA3	G	106	113	Right-handed alpha
Helix 4	AA4	G	114	121	Right-handed alpha
Helix 5	AA5	G	125	140	Right-handed alpha
Helix 6	AA6	G	147	154	Right-handed alpha
Helix 7	AA7	G	164	172	Right-handed alpha
Helix 8	AA8	G	190	202	Right-handed alpha
Helix 9	AA9	G	203	204	Right-handed 310
Helix 10	AB1	G	205	209	Right-handed 310
Helix 11	AB2	G	225	237	Right-handed alpha
Helix 12	AB3	G	239	246	Right-handed alpha
Helix 13	AB4	G	254	272	Right-handed alpha
Helix 14	AB5	G	281	290	Right-handed alpha
Helix 15	AB6	G	295	318	Right-handed alpha
Helix 16	AB7	G	346	354	Right-handed alpha
Helix 17	AB8	G	396	400	Right-handed 310
Helix 18	AB9	A	6	12	Right-handed alpha
Helix 19	AC1	A	22	29	Right-handed alpha
Helix 20	AC2	A	48	67	Right-handed alpha
Helix 21	AC3	A	84	92	Right-handed alpha
Helix 22	AC4	A	95	101	Right-handed alpha
Helix 23	AC5	A	109	123	Right-handed alpha
Helix 24	AC6	A	136	153	Right-handed alpha
Helix 25	AC7	A	153	159	Right-handed alpha
Helix 26	AC8	A	160	183	Right-handed alpha
Helix 27	AC9	A	248	253	Right-handed alpha
Helix 28	AD1	B	15	20	Right-handed alpha
Helix 29	AD2	B	24	30	Right-handed 310
Helix 30	AD3	B	31	42	Right-handed alpha
Helix 31	AD4	B	44	51	Right-handed alpha
Helix 32	AD5	B	52	61	Right-handed alpha
Helix 33	AD6	B	63	88	Right-handed alpha
Helix 34	AD7	B	104	111	Right-handed alpha
Helix 35	AD8	B	130	142	Right-handed alpha
Helix 36	AD9	B	165	175	Right-handed alpha
Helix 37	AE1	B	176	183	Right-handed alpha
Helix 38	AE2	B	185	187	Right-handed 310
Helix 39	AE3	B	196	206	Right-handed alpha
Helix 40	AE4	B	206	215	Right-handed alpha
Helix 41	AE5	B	227	235	Right-handed alpha
Helix 42	AE6	B	241	265	Right-handed alpha
Helix 43	AE7	B	292	302	Right-handed alpha
Helix 44	AE8	B	304	318	Right-handed alpha
Helix 45	AE9	B	322	328	Right-handed 310
Helix 46	AF1	B	330	339	Right-handed alpha
Helix 47	AF2	B	388	395	Right-handed alpha
Helix 48	AF3	E	2	12	Right-handed alpha
Helix 49	AF4	E	30	38	Right-handed alpha
Helix 50	AF5	E	50	60	Right-handed alpha
Helix 51	AF6	E	68	82	Right-handed alpha
Helix 52	AF7	E	95	100	Right-handed alpha
Helix 53	AF8	E	104	121	Right-handed alpha
Helix 54	AF9	E	136	149	Right-handed alpha
Helix 55	AG1	F	7	15	Right-handed alpha
Helix 56	AG2	F	25	36	Right-handed alpha
Helix 57	AG3	F	40	49	Right-handed alpha
Helix 58	AG4	F	71	80	Right-handed alpha
Helix 59	AG5	F	116	129	Right-handed alpha
Helix 60	AG6	F	135	140	Right-handed alpha
Helix 61	AG7	F	176	187	Right-handed alpha
Helix 62	AG8	F	189	198	Right-handed alpha
Helix 63	AG9	F	210	217	Right-handed alpha
Helix 64	AH1	D	13	15	Right-handed 310
Helix 65	AH2	D	35	41	Right-handed 310
Helix 66	AH3	D	54	62	Right-handed alpha
Helix 67	AH4	D	94	98	Right-handed 310
Helix 68	AH5	D	99	113	Right-handed alpha
Helix 69	AH6	D	113	121	Right-handed alpha
Helix 70	AH7	D	137	141	Right-handed 310
Helix 71	AH8	D	156	172	Right-handed alpha
Helix 72	AH9	D	183	191	Right-handed 310
Helix 73	AI1	D	212	218	Right-handed alpha
Helix 74	AI2	C	16	29	Right-handed alpha
Helix 75	AI3	C	47	55	Right-handed alpha
Helix 76	AI4	C	62	68	Right-handed alpha
Helix 77	AI5	C	76	96	Right-handed alpha
Helix 78	AI6	C	118	130	Right-handed alpha
Helix 79	AI7	C	131	152	Right-handed alpha
Helix 80	AI8	C	166	169	Right-handed 310
Helix 81	AI9	C	170	177	Right-handed alpha
Helix 82	AJ1	C	198	207	Right-handed alpha

There are 14 sheets in PDB entry 9Q2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	145	146	first strand
Strand 2	B	189	193	anti-parallel
Strand 3	B	154	159	parallel
Strand 4	B	219	224	parallel
Strand 5	B	267	276	parallel
Strand 6	B	384	386	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	145	146	first strand
Strand 2	B	189	193	anti-parallel
Strand 3	B	154	159	parallel
Strand 4	B	219	224	parallel
Strand 5	B	267	276	parallel
Strand 6	B	120	125	parallel
Strand 7	B	396	406	parallel
Strand 8	B	431	440	anti-parallel
Strand 9	B	446	453	anti-parallel
Strand 10	B	456	459	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	160	first strand
Strand 2	G	175	176	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	247	251	first strand
Strand 2	G	214	219	parallel
Strand 3	G	274	280	parallel
Strand 4	G	320	328	parallel
Strand 5	G	343	344	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	247	251	first strand
Strand 2	G	214	219	parallel
Strand 3	G	274	280	parallel
Strand 4	G	320	328	parallel
Strand 5	G	180	185	parallel
Strand 6	G	356	362	parallel
Strand 7	G	367	374	anti-parallel
Strand 8	G	382	388	anti-parallel
Strand 9	G	391	393	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	106	first strand
Strand 2	A	74	78	parallel
Strand 3	A	131	135	parallel
Strand 4	A	185	189	parallel
Strand 5	A	37	42	parallel
Strand 6	A	258	260	parallel
Strand 7	A	305	313	anti-parallel
Strand 8	A	264	266	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	106	first strand
Strand 2	A	74	78	parallel
Strand 3	A	131	135	parallel
Strand 4	A	185	189	parallel
Strand 5	A	37	42	parallel
Strand 6	A	258	260	parallel
Strand 7	A	305	313	anti-parallel
Strand 8	A	338	344	anti-parallel
Strand 9	A	351	353	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	195	first strand
Strand 2	A	233	236	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	115	116	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	90	94	parallel
Strand 3	E	24	27	parallel
Strand 4	E	61	64	parallel
Strand 5	D	10	11	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	114	first strand
Strand 2	F	105	108	anti-parallel
Strand 3	F	94	95	anti-parallel
Strand 4	F	53	54	anti-parallel
Strand 5	F	203	204	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	58	first strand
Strand 2	F	207	208	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	69	74	parallel
Strand 3	D	130	136	parallel
Strand 4	D	174	179	parallel
Strand 5	D	43	48	parallel
Strand 6	D	221	227	parallel
Strand 7	D	232	236	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	73	first strand
Strand 2	C	36	41	parallel
Strand 3	C	110	117	parallel
Strand 4	C	157	165	parallel
Strand 5	C	9	13	parallel
Strand 6	C	210	211	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q2C

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q2C