Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q2E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q2E entry

There are 7 chains in PDB entry 9Q2E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 354
B	MET 14	ALA 460
C	MET 1	PHE 212
D	MET 1	ALA 239
E	MET 1	ARG 150
F	ASP 4	GLU 223
H	T 2	T 7

There are 69 helices in PDB entry 9Q2E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	14	Right-handed alpha
Helix 2	AA2	A	22	27	Right-handed alpha
Helix 3	AA3	A	48	66	Right-handed alpha
Helix 4	AA4	A	84	92	Right-handed alpha
Helix 5	AA5	A	95	101	Right-handed alpha
Helix 6	AA6	A	109	122	Right-handed alpha
Helix 7	AA7	A	136	153	Right-handed alpha
Helix 8	AA8	A	153	158	Right-handed alpha
Helix 9	AA9	A	159	183	Right-handed alpha
Helix 10	AB1	A	248	253	Right-handed alpha
Helix 11	AB2	B	15	20	Right-handed alpha
Helix 12	AB3	B	23	27	Right-handed 310
Helix 13	AB4	B	31	42	Right-handed alpha
Helix 14	AB5	B	44	49	Right-handed alpha
Helix 15	AB6	B	52	60	Right-handed alpha
Helix 16	AB7	B	63	88	Right-handed alpha
Helix 17	AB8	B	104	111	Right-handed alpha
Helix 18	AB9	B	130	142	Right-handed alpha
Helix 19	AC1	B	143	144	Right-handed 310
Helix 20	AC2	B	145	149	Right-handed 310
Helix 21	AC3	B	165	176	Right-handed alpha
Helix 22	AC4	B	176	181	Right-handed alpha
Helix 23	AC5	B	185	187	Right-handed 310
Helix 24	AC6	B	196	206	Right-handed alpha
Helix 25	AC7	B	206	216	Right-handed alpha
Helix 26	AC8	B	228	235	Right-handed alpha
Helix 27	AC9	B	239	264	Right-handed alpha
Helix 28	AD1	B	292	297	Right-handed alpha
Helix 29	AD2	B	298	300	Right-handed 310
Helix 30	AD3	B	304	317	Right-handed alpha
Helix 31	AD4	B	388	394	Right-handed alpha
Helix 32	AD5	C	2	6	Right-handed 310
Helix 33	AD6	C	16	27	Right-handed alpha
Helix 34	AD7	C	47	55	Right-handed alpha
Helix 35	AD8	C	62	67	Right-handed alpha
Helix 36	AD9	C	76	96	Right-handed alpha
Helix 37	AE1	C	118	130	Right-handed alpha
Helix 38	AE2	C	131	150	Right-handed alpha
Helix 39	AE3	C	166	169	Right-handed 310
Helix 40	AE4	C	170	178	Right-handed alpha
Helix 41	AE5	C	198	207	Right-handed alpha
Helix 42	AE6	D	2	6	Right-handed alpha
Helix 43	AE7	D	13	15	Right-handed 310
Helix 44	AE8	D	35	41	Right-handed 310
Helix 45	AE9	D	54	60	Right-handed alpha
Helix 46	AF1	D	94	98	Right-handed 310
Helix 47	AF2	D	99	113	Right-handed alpha
Helix 48	AF3	D	113	121	Right-handed alpha
Helix 49	AF4	D	137	141	Right-handed 310
Helix 50	AF5	D	154	171	Right-handed alpha
Helix 51	AF6	D	181	187	Right-handed alpha
Helix 52	AF7	D	188	191	Right-handed 310
Helix 53	AF8	D	212	218	Right-handed alpha
Helix 54	AF9	E	2	12	Right-handed alpha
Helix 55	AG1	E	30	38	Right-handed alpha
Helix 56	AG2	E	50	60	Right-handed alpha
Helix 57	AG3	E	68	82	Right-handed alpha
Helix 58	AG4	E	95	100	Right-handed alpha
Helix 59	AG5	E	104	121	Right-handed alpha
Helix 60	AG6	E	136	150	Right-handed alpha
Helix 61	AG7	F	7	15	Right-handed alpha
Helix 62	AG8	F	27	35	Right-handed 310
Helix 63	AG9	F	39	51	Right-handed alpha
Helix 64	AH1	F	71	80	Right-handed alpha
Helix 65	AH2	F	116	129	Right-handed alpha
Helix 66	AH3	F	135	140	Right-handed alpha
Helix 67	AH4	F	176	187	Right-handed alpha
Helix 68	AH5	F	190	198	Right-handed alpha
Helix 69	AH6	F	210	219	Right-handed alpha

There are 10 sheets in PDB entry 9Q2E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	C	69	73	anti-parallel
Strand 3	C	34	41	parallel
Strand 4	C	110	117	parallel
Strand 5	C	157	165	parallel
Strand 6	C	9	13	parallel
Strand 7	C	210	211	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	106	first strand
Strand 2	A	74	78	parallel
Strand 3	A	131	135	parallel
Strand 4	A	185	195	parallel
Strand 5	A	38	43	parallel
Strand 6	A	258	260	parallel
Strand 7	A	306	313	anti-parallel
Strand 8	A	263	265	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	236	first strand
Strand 2	A	185	195	anti-parallel
Strand 3	A	38	43	parallel
Strand 4	A	258	260	parallel
Strand 5	A	306	313	anti-parallel
Strand 6	A	338	344	anti-parallel
Strand 7	A	351	353	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	115	116	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	193	first strand
Strand 2	B	154	159	parallel
Strand 3	B	219	224	parallel
Strand 4	B	267	272	parallel
Strand 5	B	120	124	parallel
Strand 6	B	396	405	parallel
Strand 7	B	432	440	anti-parallel
Strand 8	B	446	453	anti-parallel
Strand 9	B	456	459	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	276	first strand
Strand 2	B	384	386	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	E	61	66	anti-parallel
Strand 3	E	24	29	parallel
Strand 4	E	90	94	parallel
Strand 5	E	125	129	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	68	73	parallel
Strand 3	D	129	135	parallel
Strand 4	D	174	179	parallel
Strand 5	D	43	47	parallel
Strand 6	D	221	226	parallel
Strand 7	D	233	236	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	114	first strand
Strand 2	F	105	108	anti-parallel
Strand 3	F	91	95	anti-parallel
Strand 4	F	53	58	anti-parallel
Strand 5	F	204	208	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	144	first strand
Strand 2	F	166	169	anti-parallel
Strand 3	F	157	158	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q2E

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q2E