Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q2F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q2F entry

There are 9 chains in PDB entry 9Q2F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 357
B	MET 14	ALA 460
C	MET 1	PHE 212
D	MET 1	ALA 239
E	MET 1	ARG 150
F	ASP 4	GLU 223
G	PHE 80	GLU 400
H	T 2	T 10
I	VAL 81	PRO 395

There are103 helices in PDB entry 9Q2F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	14	Right-handed alpha
Helix 2	AA2	A	22	27	Right-handed alpha
Helix 3	AA3	A	48	65	Right-handed alpha
Helix 4	AA4	A	84	90	Right-handed alpha
Helix 5	AA5	A	95	100	Right-handed alpha
Helix 6	AA6	A	109	123	Right-handed alpha
Helix 7	AA7	A	138	153	Right-handed alpha
Helix 8	AA8	A	153	158	Right-handed alpha
Helix 9	AA9	A	159	183	Right-handed alpha
Helix 10	AB1	A	248	253	Right-handed alpha
Helix 11	AB2	B	15	20	Right-handed alpha
Helix 12	AB3	B	23	28	Right-handed 310
Helix 13	AB4	B	31	41	Right-handed alpha
Helix 14	AB5	B	44	49	Right-handed alpha
Helix 15	AB6	B	52	61	Right-handed alpha
Helix 16	AB7	B	63	87	Right-handed alpha
Helix 17	AB8	B	104	111	Right-handed alpha
Helix 18	AB9	B	130	142	Right-handed alpha
Helix 19	AC1	B	143	144	Right-handed 310
Helix 20	AC2	B	145	149	Right-handed 310
Helix 21	AC3	B	165	176	Right-handed alpha
Helix 22	AC4	B	176	181	Right-handed alpha
Helix 23	AC5	B	185	187	Right-handed 310
Helix 24	AC6	B	196	206	Right-handed alpha
Helix 25	AC7	B	206	215	Right-handed alpha
Helix 26	AC8	B	227	235	Right-handed alpha
Helix 27	AC9	B	239	264	Right-handed alpha
Helix 28	AD1	B	292	301	Right-handed alpha
Helix 29	AD2	B	304	318	Right-handed alpha
Helix 30	AD3	B	322	327	Right-handed 310
Helix 31	AD4	B	330	339	Right-handed alpha
Helix 32	AD5	B	388	394	Right-handed alpha
Helix 33	AD6	C	2	6	Right-handed 310
Helix 34	AD7	C	16	29	Right-handed alpha
Helix 35	AD8	C	47	55	Right-handed alpha
Helix 36	AD9	C	59	67	Right-handed alpha
Helix 37	AE1	C	76	96	Right-handed alpha
Helix 38	AE2	C	118	130	Right-handed alpha
Helix 39	AE3	C	131	152	Right-handed alpha
Helix 40	AE4	C	170	177	Right-handed alpha
Helix 41	AE5	C	198	207	Right-handed alpha
Helix 42	AE6	D	1	6	Right-handed 310
Helix 43	AE7	D	13	15	Right-handed 310
Helix 44	AE8	D	35	41	Right-handed 310
Helix 45	AE9	D	56	61	Right-handed alpha
Helix 46	AF1	D	99	113	Right-handed alpha
Helix 47	AF2	D	113	121	Right-handed alpha
Helix 48	AF3	D	137	142	Right-handed alpha
Helix 49	AF4	D	155	172	Right-handed alpha
Helix 50	AF5	D	181	187	Right-handed alpha
Helix 51	AF6	D	188	191	Right-handed 310
Helix 52	AF7	D	212	217	Right-handed alpha
Helix 53	AF8	E	2	12	Right-handed alpha
Helix 54	AF9	E	30	38	Right-handed alpha
Helix 55	AG1	E	40	45	Right-handed 310
Helix 56	AG2	E	50	60	Right-handed alpha
Helix 57	AG3	E	68	82	Right-handed alpha
Helix 58	AG4	E	95	100	Right-handed alpha
Helix 59	AG5	E	104	121	Right-handed alpha
Helix 60	AG6	E	136	150	Right-handed alpha
Helix 61	AG7	F	7	16	Right-handed alpha
Helix 62	AG8	F	25	33	Right-handed alpha
Helix 63	AG9	F	39	50	Right-handed alpha
Helix 64	AH1	F	71	74	Right-handed 310
Helix 65	AH2	F	75	80	Right-handed alpha
Helix 66	AH3	F	109	112	Right-handed 310
Helix 67	AH4	F	116	129	Right-handed alpha
Helix 68	AH5	F	135	140	Right-handed alpha
Helix 69	AH6	F	176	186	Right-handed alpha
Helix 70	AH7	F	189	198	Right-handed alpha
Helix 71	AH8	F	210	217	Right-handed alpha
Helix 72	AH9	G	82	88	Right-handed 310
Helix 73	AI1	G	92	101	Right-handed alpha
Helix 74	AI2	G	106	113	Right-handed alpha
Helix 75	AI3	G	116	121	Right-handed 310
Helix 76	AI4	G	125	140	Right-handed alpha
Helix 77	AI5	G	147	153	Right-handed alpha
Helix 78	AI6	G	154	156	Right-handed 310
Helix 79	AI7	G	164	172	Right-handed alpha
Helix 80	AI8	G	190	202	Right-handed alpha
Helix 81	AI9	G	205	209	Right-handed 310
Helix 82	AJ1	G	225	236	Right-handed alpha
Helix 83	AJ2	G	239	244	Right-handed alpha
Helix 84	AJ3	G	254	272	Right-handed alpha
Helix 85	AJ4	G	285	290	Right-handed alpha
Helix 86	AJ5	G	295	318	Right-handed alpha
Helix 87	AJ6	G	346	354	Right-handed alpha
Helix 88	AJ7	G	396	400	Right-handed 310
Helix 89	AJ8	I	82	87	Right-handed 310
Helix 90	AJ9	I	92	101	Right-handed alpha
Helix 91	AK1	I	106	113	Right-handed alpha
Helix 92	AK2	I	114	119	Right-handed alpha
Helix 93	AK3	I	125	140	Right-handed alpha
Helix 94	AK4	I	147	156	Right-handed alpha
Helix 95	AK5	I	164	169	Right-handed alpha
Helix 96	AK6	I	190	193	Right-handed 310
Helix 97	AK7	I	194	202	Right-handed alpha
Helix 98	AK8	I	228	237	Right-handed alpha
Helix 99	AK9	I	239	245	Right-handed 310
Helix 100	AL1	I	254	272	Right-handed alpha
Helix 101	AL2	I	282	287	Right-handed alpha
Helix 102	AL3	I	296	318	Right-handed alpha
Helix 103	AL4	I	347	352	Right-handed alpha

There are 18 sheets in PDB entry 9Q2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	C	69	73	anti-parallel
Strand 3	C	34	41	parallel
Strand 4	C	110	117	parallel
Strand 5	C	157	165	parallel
Strand 6	C	9	13	parallel
Strand 7	C	210	211	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	106	first strand
Strand 2	A	73	78	parallel
Strand 3	A	129	135	parallel
Strand 4	A	185	190	parallel
Strand 5	A	37	42	parallel
Strand 6	A	257	260	parallel
Strand 7	A	306	313	anti-parallel
Strand 8	A	263	265	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	106	first strand
Strand 2	A	73	78	parallel
Strand 3	A	129	135	parallel
Strand 4	A	185	190	parallel
Strand 5	A	37	42	parallel
Strand 6	A	257	260	parallel
Strand 7	A	306	313	anti-parallel
Strand 8	A	339	344	anti-parallel
Strand 9	A	351	353	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	195	first strand
Strand 2	A	233	236	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	115	116	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	459	first strand
Strand 2	B	446	453	anti-parallel
Strand 3	B	431	440	anti-parallel
Strand 4	B	396	406	anti-parallel
Strand 5	B	120	124	parallel
Strand 6	B	267	272	parallel
Strand 7	B	219	225	parallel
Strand 8	B	154	159	parallel
Strand 9	B	189	193	parallel
Strand 10	G	145	146	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	276	first strand
Strand 2	B	384	386	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	E	61	66	anti-parallel
Strand 3	E	24	29	parallel
Strand 4	E	90	94	parallel
Strand 5	E	125	129	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	E	47	48	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	92	first strand
Strand 2	D	70	73	parallel
Strand 3	D	132	135	parallel
Strand 4	D	174	179	parallel
Strand 5	D	43	47	parallel
Strand 6	D	221	226	parallel
Strand 7	D	233	236	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	114	first strand
Strand 2	F	105	108	anti-parallel
Strand 3	F	91	95	anti-parallel
Strand 4	F	53	58	anti-parallel
Strand 5	F	207	208	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	143	first strand
Strand 2	F	167	169	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	160	first strand
Strand 2	G	175	176	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	391	393	first strand
Strand 2	G	382	388	anti-parallel
Strand 3	G	367	374	anti-parallel
Strand 4	G	356	362	anti-parallel
Strand 5	G	180	185	parallel
Strand 6	G	320	325	parallel
Strand 7	G	274	279	parallel
Strand 8	G	214	219	parallel
Strand 9	G	247	251	parallel
Strand 10	I	145	146	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	327	328	first strand
Strand 2	G	343	344	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	159	160	first strand
Strand 2	I	175	176	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	247	251	first strand
Strand 2	I	215	219	parallel
Strand 3	I	276	278	parallel
Strand 4	I	320	324	parallel
Strand 5	I	180	184	parallel
Strand 6	I	356	359	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	361	364	first strand
Strand 2	I	367	371	anti-parallel
Strand 3	I	382	388	anti-parallel
Strand 4	I	391	393	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q2F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q2F