Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q39 entry

There is 1 chain in PDB entry 9Q39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9Q39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 35Right-handed alpha
Helix 2
AA2
A
44 58Right-handed alpha
Helix 3
AA3
A
87 101Right-handed alpha
Helix 4
AA4
A
105 121Right-handed alpha
Helix 5
AA5
A
136 140Right-handed 310
Helix 6
AA6
A
152 163Right-handed alpha
Helix 7
AA7
A
166 175Right-handed alpha
Helix 8
AA8
A
176 179Right-handed 310
Helix 9
AA9
A
183 188Right-handed alpha
Helix 10
AB1
A
202 211Right-handed alpha
Helix 11
AB2
A
234 239Right-handed alpha
Helix 12
AB3
A
243 255Right-handed alpha
Helix 13
AB4
A
256 274Right-handed alpha
Helix 14
AB5
A
290 295Right-handed alpha
Helix 15
AB6
A
312 323Right-handed alpha
Helix 16
AB7
A
359 366Right-handed alpha
Helix 17
AB8
A
371 380Right-handed alpha
Helix 18
AB9
A
380 385Right-handed alpha
Helix 19
AC1
A
398 413Right-handed alpha
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There are 2 sheets in PDB entry 9Q39. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
191 192anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 217first strand
Strand 2
A
223 227anti-parallel
Strand 3
A
232 233anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il