Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q3F entry

There are 2 chains in PDB entry 9Q3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 21ALA 856
B
 A 1 A 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9Q3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 80Right-handed alpha
Helix 2
AA2
A
80 85Right-handed alpha
Helix 3
AA3
A
138 147Right-handed alpha
Helix 4
AA4
A
153 164Right-handed alpha
Helix 5
AA5
A
165 172Right-handed alpha
Helix 6
AA6
A
226 236Right-handed alpha
Helix 7
AA7
A
251 260Right-handed alpha
Helix 8
AA8
A
304 314Right-handed alpha
Helix 9
AA9
A
354 366Right-handed alpha
Helix 10
AB1
A
368 384Right-handed alpha
Helix 11
AB2
A
385 387Right-handed 310
Helix 12
AB3
A
388 395Right-handed alpha
Helix 13
AB4
A
461 478Right-handed alpha
Helix 14
AB5
A
498 509Right-handed alpha
Helix 15
AB6
A
524 535Right-handed alpha
Helix 16
AB7
A
546 551Right-handed alpha
Helix 17
AB8
A
553 569Right-handed alpha
Helix 18
AB9
A
581 586Right-handed 310
Helix 19
AC1
A
638 655Right-handed alpha
Helix 20
AC2
A
672 692Right-handed alpha
Helix 21
AC3
A
772 784Right-handed alpha
Helix 22
AC4
A
797 815Right-handed alpha
Helix 23
AC5
A
836 844Right-handed alpha
Helix 24
AC6
A
846 850Right-handed 310
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There are 10 sheets in PDB entry 9Q3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
408 409anti-parallel
Strand 3
A
731 732anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 405first strand
Strand 2
A
38 40anti-parallel
Strand 3
A
712 714anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 202first strand
Strand 2
A
210 221anti-parallel
Strand 3
A
42 46anti-parallel
Strand 4
A
397 398anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
97 100anti-parallel
Strand 3
A
51 56anti-parallel
Strand 4
A
136 137anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
128 129anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 281first strand
Strand 2
A
324 327anti-parallel
Strand 3
A
334 337anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 416first strand
Strand 2
A
574 575anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 490first strand
Strand 2
A
449 451parallel
Strand 3
A
515 519parallel
Strand 4
A
541 545parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 624first strand
Strand 2
A
607 614anti-parallel
Strand 3
A
627 629anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 624first strand
Strand 2
A
607 614anti-parallel
Strand 3
A
588 596anti-parallel
Strand 4
A
660 666parallel
Strand 5
A
698 705parallel
Strand 6
A
760 766anti-parallel
Strand 7
A
744 747anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il