Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q3J entry

There are 8 chains in PDB entry 9Q3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	ASP 480
B	LYS 4	ASP 480
C	LYS 4	ASP 480
D	LYS 4	ASP 480
E	LYS 4	ASP 480
F	LYS 4	ASP 480
G	LYS 4	ASP 480
H	LYS 4	ASP 480

There are158 helices in PDB entry 9Q3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	52	Right-handed alpha
Helix 2	AA2	A	58	63	Right-handed alpha
Helix 3	AA3	A	85	101	Right-handed alpha
Helix 4	AA4	A	104	106	Right-handed 310
Helix 5	AA5	A	121	138	Right-handed alpha
Helix 6	AA6	A	150	152	Right-handed 310
Helix 7	AA7	A	170	175	Right-handed alpha
Helix 8	AA8	A	195	203	Right-handed alpha
Helix 9	AA9	A	206	211	Right-handed alpha
Helix 10	AB1	A	234	248	Right-handed alpha
Helix 11	AB2	A	272	287	Right-handed alpha
Helix 12	AB3	A	316	331	Right-handed alpha
Helix 13	AB4	A	358	368	Right-handed alpha
Helix 14	AB5	A	373	379	Right-handed 310
Helix 15	AB6	A	380	386	Right-handed alpha
Helix 16	AB7	A	387	397	Right-handed alpha
Helix 17	AB8	A	413	419	Right-handed alpha
Helix 18	AB9	A	429	436	Right-handed alpha
Helix 19	AC1	A	443	455	Right-handed alpha
Helix 20	AC2	B	41	52	Right-handed alpha
Helix 21	AC3	B	58	63	Right-handed alpha
Helix 22	AC4	B	85	102	Right-handed alpha
Helix 23	AC5	B	104	106	Right-handed 310
Helix 24	AC6	B	121	138	Right-handed alpha
Helix 25	AC7	B	150	152	Right-handed 310
Helix 26	AC8	B	170	174	Right-handed alpha
Helix 27	AC9	B	194	203	Right-handed alpha
Helix 28	AD1	B	206	211	Right-handed alpha
Helix 29	AD2	B	234	248	Right-handed alpha
Helix 30	AD3	B	272	287	Right-handed alpha
Helix 31	AD4	B	316	331	Right-handed alpha
Helix 32	AD5	B	358	368	Right-handed alpha
Helix 33	AD6	B	373	379	Right-handed 310
Helix 34	AD7	B	380	386	Right-handed alpha
Helix 35	AD8	B	387	397	Right-handed alpha
Helix 36	AD9	B	403	407	Right-handed 310
Helix 37	AE1	B	413	419	Right-handed alpha
Helix 38	AE2	B	429	436	Right-handed alpha
Helix 39	AE3	B	443	455	Right-handed alpha
Helix 40	AE4	C	41	52	Right-handed alpha
Helix 41	AE5	C	58	63	Right-handed alpha
Helix 42	AE6	C	85	101	Right-handed alpha
Helix 43	AE7	C	104	106	Right-handed 310
Helix 44	AE8	C	121	138	Right-handed alpha
Helix 45	AE9	C	150	152	Right-handed 310
Helix 46	AF1	C	170	175	Right-handed alpha
Helix 47	AF2	C	197	203	Right-handed alpha
Helix 48	AF3	C	206	211	Right-handed alpha
Helix 49	AF4	C	234	248	Right-handed alpha
Helix 50	AF5	C	272	287	Right-handed alpha
Helix 51	AF6	C	316	332	Right-handed alpha
Helix 52	AF7	C	358	368	Right-handed alpha
Helix 53	AF8	C	373	379	Right-handed 310
Helix 54	AF9	C	380	386	Right-handed alpha
Helix 55	AG1	C	387	397	Right-handed alpha
Helix 56	AG2	C	401	407	Right-handed 310
Helix 57	AG3	C	413	419	Right-handed alpha
Helix 58	AG4	C	429	436	Right-handed alpha
Helix 59	AG5	C	443	455	Right-handed alpha
Helix 60	AG6	D	41	52	Right-handed alpha
Helix 61	AG7	D	58	63	Right-handed alpha
Helix 62	AG8	D	85	101	Right-handed alpha
Helix 63	AG9	D	104	106	Right-handed 310
Helix 64	AH1	D	121	130	Right-handed alpha
Helix 65	AH2	D	130	138	Right-handed alpha
Helix 66	AH3	D	150	152	Right-handed 310
Helix 67	AH4	D	170	175	Right-handed alpha
Helix 68	AH5	D	195	203	Right-handed alpha
Helix 69	AH6	D	234	248	Right-handed alpha
Helix 70	AH7	D	272	287	Right-handed alpha
Helix 71	AH8	D	316	331	Right-handed alpha
Helix 72	AH9	D	358	368	Right-handed alpha
Helix 73	AI1	D	373	379	Right-handed 310
Helix 74	AI2	D	380	386	Right-handed alpha
Helix 75	AI3	D	387	397	Right-handed alpha
Helix 76	AI4	D	403	407	Right-handed 310
Helix 77	AI5	D	413	419	Right-handed alpha
Helix 78	AI6	D	429	436	Right-handed alpha
Helix 79	AI7	D	443	455	Right-handed alpha
Helix 80	AI8	E	41	52	Right-handed alpha
Helix 81	AI9	E	58	63	Right-handed alpha
Helix 82	AJ1	E	85	102	Right-handed alpha
Helix 83	AJ2	E	121	130	Right-handed alpha
Helix 84	AJ3	E	131	138	Right-handed alpha
Helix 85	AJ4	E	139	141	Right-handed 310
Helix 86	AJ5	E	170	174	Right-handed alpha
Helix 87	AJ6	E	194	203	Right-handed alpha
Helix 88	AJ7	E	205	210	Right-handed alpha
Helix 89	AJ8	E	235	248	Right-handed alpha
Helix 90	AJ9	E	272	287	Right-handed alpha
Helix 91	AK1	E	316	331	Right-handed alpha
Helix 92	AK2	E	358	368	Right-handed alpha
Helix 93	AK3	E	373	379	Right-handed 310
Helix 94	AK4	E	380	386	Right-handed alpha
Helix 95	AK5	E	387	397	Right-handed alpha
Helix 96	AK6	E	401	407	Right-handed 310
Helix 97	AK7	E	412	417	Right-handed alpha
Helix 98	AK8	E	429	436	Right-handed alpha
Helix 99	AK9	E	443	455	Right-handed alpha
Helix 100	AL1	F	41	51	Right-handed alpha
Helix 101	AL2	F	58	63	Right-handed alpha
Helix 102	AL3	F	85	102	Right-handed alpha
Helix 103	AL4	F	104	106	Right-handed 310
Helix 104	AL5	F	121	130	Right-handed alpha
Helix 105	AL6	F	131	138	Right-handed alpha
Helix 106	AL7	F	139	141	Right-handed 310
Helix 107	AL8	F	170	175	Right-handed alpha
Helix 108	AL9	F	195	204	Right-handed alpha
Helix 109	AM1	F	205	210	Right-handed alpha
Helix 110	AM2	F	235	248	Right-handed alpha
Helix 111	AM3	F	272	288	Right-handed alpha
Helix 112	AM4	F	316	331	Right-handed alpha
Helix 113	AM5	F	358	368	Right-handed alpha
Helix 114	AM6	F	374	379	Right-handed 310
Helix 115	AM7	F	380	386	Right-handed alpha
Helix 116	AM8	F	387	397	Right-handed alpha
Helix 117	AM9	F	403	407	Right-handed 310
Helix 118	AN1	F	411	412	Right-handed 310
Helix 119	AN2	F	413	419	Right-handed alpha
Helix 120	AN3	F	429	436	Right-handed alpha
Helix 121	AN4	F	443	455	Right-handed alpha
Helix 122	AN5	G	41	52	Right-handed alpha
Helix 123	AN6	G	58	62	Right-handed 310
Helix 124	AN7	G	85	102	Right-handed alpha
Helix 125	AN8	G	121	138	Right-handed alpha
Helix 126	AN9	G	139	141	Right-handed 310
Helix 127	AO1	G	170	175	Right-handed alpha
Helix 128	AO2	G	194	204	Right-handed alpha
Helix 129	AO3	G	205	211	Right-handed alpha
Helix 130	AO4	G	235	248	Right-handed alpha
Helix 131	AO5	G	272	288	Right-handed alpha
Helix 132	AO6	G	316	331	Right-handed alpha
Helix 133	AO7	G	358	368	Right-handed alpha
Helix 134	AO8	G	374	379	Right-handed 310
Helix 135	AO9	G	380	386	Right-handed alpha
Helix 136	AP1	G	387	397	Right-handed alpha
Helix 137	AP2	G	403	407	Right-handed 310
Helix 138	AP3	G	414	418	Right-handed alpha
Helix 139	AP4	G	429	436	Right-handed alpha
Helix 140	AP5	G	443	455	Right-handed alpha
Helix 141	AP6	H	41	52	Right-handed alpha
Helix 142	AP7	H	58	63	Right-handed alpha
Helix 143	AP8	H	85	102	Right-handed alpha
Helix 144	AP9	H	121	138	Right-handed alpha
Helix 145	AQ1	H	139	141	Right-handed 310
Helix 146	AQ2	H	170	174	Right-handed alpha
Helix 147	AQ3	H	195	203	Right-handed alpha
Helix 148	AQ4	H	205	210	Right-handed alpha
Helix 149	AQ5	H	235	248	Right-handed alpha
Helix 150	AQ6	H	272	287	Right-handed alpha
Helix 151	AQ7	H	316	331	Right-handed alpha
Helix 152	AQ8	H	358	368	Right-handed alpha
Helix 153	AQ9	H	374	379	Right-handed 310
Helix 154	AR1	H	380	386	Right-handed alpha
Helix 155	AR2	H	387	397	Right-handed alpha
Helix 156	AR3	H	413	419	Right-handed alpha
Helix 157	AR4	H	429	436	Right-handed alpha
Helix 158	AR5	H	443	455	Right-handed alpha

There are 44 sheets in PDB entry 9Q3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	12	16	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	462	464	parallel
Strand 3	A	296	302	parallel
Strand 4	A	335	344	parallel
Strand 5	A	421	425	parallel
Strand 6	A	439	441	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	145	first strand
Strand 2	A	108	113	parallel
Strand 3	A	69	74	parallel
Strand 4	A	177	184	parallel
Strand 5	A	252	258	parallel
Strand 6	A	264	271	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	159	first strand
Strand 2	A	165	169	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	289	first strand
Strand 2	A	475	476	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	310	311	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	12	16	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	462	464	parallel
Strand 3	B	296	302	parallel
Strand 4	B	335	344	parallel
Strand 5	B	421	425	parallel
Strand 6	B	439	441	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	145	first strand
Strand 2	B	108	113	parallel
Strand 3	B	69	74	parallel
Strand 4	B	177	186	parallel
Strand 5	B	192	193	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	145	first strand
Strand 2	B	108	113	parallel
Strand 3	B	69	74	parallel
Strand 4	B	177	186	parallel
Strand 5	B	252	258	parallel
Strand 6	B	264	271	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	159	first strand
Strand 2	B	165	169	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	290	first strand
Strand 2	B	475	477	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	13	16	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	24	first strand
Strand 2	C	462	465	parallel
Strand 3	C	296	302	parallel
Strand 4	C	335	344	parallel
Strand 5	C	421	425	parallel
Strand 6	C	439	441	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	145	first strand
Strand 2	C	108	113	parallel
Strand 3	C	69	74	parallel
Strand 4	C	177	184	parallel
Strand 5	C	252	257	parallel
Strand 6	C	266	271	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	156	first strand
Strand 2	C	167	169	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	290	first strand
Strand 2	C	475	477	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	310	311	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	14	16	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	24	first strand
Strand 2	D	462	464	parallel
Strand 3	D	296	302	parallel
Strand 4	D	335	344	parallel
Strand 5	D	421	425	parallel
Strand 6	D	439	441	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	145	first strand
Strand 2	D	108	113	parallel
Strand 3	D	69	74	parallel
Strand 4	D	177	184	parallel
Strand 5	D	252	258	parallel
Strand 6	D	264	271	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	159	first strand
Strand 2	D	165	169	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	290	first strand
Strand 2	D	475	477	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	307	first strand
Strand 2	D	310	311	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	9	first strand
Strand 2	E	12	16	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	24	first strand
Strand 2	E	462	464	parallel
Strand 3	E	296	302	parallel
Strand 4	E	335	344	parallel
Strand 5	E	419	425	parallel
Strand 6	E	439	441	parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	143	145	first strand
Strand 2	E	109	113	parallel
Strand 3	E	69	74	parallel
Strand 4	E	177	184	parallel
Strand 5	E	252	258	parallel
Strand 6	E	264	271	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	159	first strand
Strand 2	E	165	169	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	288	292	first strand
Strand 2	E	475	478	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	9	first strand
Strand 2	F	12	16	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	24	first strand
Strand 2	F	462	465	parallel
Strand 3	F	296	302	parallel
Strand 4	F	335	344	parallel
Strand 5	F	421	425	parallel
Strand 6	F	439	440	parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	145	first strand
Strand 2	F	108	113	parallel
Strand 3	F	69	74	parallel
Strand 4	F	177	184	parallel
Strand 5	F	252	258	parallel
Strand 6	F	264	271	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	159	first strand
Strand 2	F	165	169	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	289	292	first strand
Strand 2	F	476	478	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	7	first strand
Strand 2	G	14	16	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	24	first strand
Strand 2	G	462	465	parallel
Strand 3	G	296	302	parallel
Strand 4	G	335	344	parallel
Strand 5	G	419	425	parallel
Strand 6	G	439	440	parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	143	145	first strand
Strand 2	G	109	113	parallel
Strand 3	G	69	74	parallel
Strand 4	G	177	184	parallel
Strand 5	G	252	258	parallel
Strand 6	G	264	271	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	159	first strand
Strand 2	G	165	169	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	289	292	first strand
Strand 2	G	476	478	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	9	first strand
Strand 2	H	12	16	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	24	first strand
Strand 2	H	462	464	parallel
Strand 3	H	296	302	parallel
Strand 4	H	335	344	parallel
Strand 5	H	421	425	parallel
Strand 6	H	439	440	parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	143	145	first strand
Strand 2	H	109	113	parallel
Strand 3	H	69	74	parallel
Strand 4	H	177	184	parallel
Strand 5	H	252	258	parallel
Strand 6	H	264	271	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	159	first strand
Strand 2	H	165	169	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	288	292	first strand
Strand 2	H	475	478	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q3J