Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q3V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q3V entry

There are 2 chains in PDB entry 9Q3V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 333GLY 526
A
 SER 19SER 613
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9Q3V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
416 422Right-handed alpha
Helix 2
AA2
A
20 53Right-handed alpha
Helix 3
AA3
A
55 81Right-handed alpha
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
90 101Right-handed alpha
Helix 6
AA6
A
109 129Right-handed alpha
Helix 7
AA7
A
134 138Right-handed 310
Helix 8
AA8
A
146 151Right-handed alpha
Helix 9
AA9
A
152 154Right-handed 310
Helix 10
AB1
A
156 172Right-handed alpha
Helix 11
AB2
A
175 193Right-handed alpha
Helix 12
AB3
A
197 203Right-handed alpha
Helix 13
AB4
A
219 251Right-handed alpha
Helix 14
AB5
A
277 282Right-handed alpha
Helix 15
AB6
A
292 299Right-handed alpha
Helix 16
AB7
A
302 317Right-handed alpha
Helix 17
AB8
A
325 330Right-handed alpha
Helix 18
AB9
A
364 382Right-handed alpha
Helix 19
AC1
A
388 392Right-handed 310
Helix 20
AC2
A
400 410Right-handed alpha
Helix 21
AC3
A
413 421Right-handed alpha
Helix 22
AC4
A
430 446Right-handed alpha
Helix 23
AC5
A
448 465Right-handed alpha
Helix 24
AC6
A
468 470Right-handed 310
Helix 25
AC7
A
471 484Right-handed alpha
Helix 26
AC8
A
502 507Right-handed alpha
Helix 27
AC9
A
512 532Right-handed alpha
Helix 28
AD1
A
547 558Right-handed alpha
Helix 29
AD2
A
559 563Right-handed 310
Helix 30
AD3
A
564 574Right-handed alpha
Helix 31
AD4
A
587 598Right-handed alpha
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There are 3 sheets in PDB entry 9Q3V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 357first strand
Strand 2
B
394 402anti-parallel
Strand 3
B
508 516anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
379 380anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
356 358anti-parallel
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