Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q3X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q3X entry

There are 18 chains in PDB entry 9Q3X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ALA 31	VAL 505
B	ILE 515	ASP 664
H	GLN 3	VAL 109
L	MET 4	ILE 106
h	MET 2	SER 111
l	GLN 6	LEU 107
A	ALA 31	VAL 505
C	ILE 515	ASP 664
D	GLN 3	VAL 109
E	MET 4	ILE 106
d	MET 2	SER 111
e	GLN 6	LEU 107
I	ALA 31	VAL 505
J	ILE 515	ASP 664
K	GLN 3	VAL 109
M	MET 4	ILE 106
k	MET 2	SER 111
m	GLN 6	LEU 107

There are 51 helices in PDB entry 9Q3X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	102	115	Right-handed alpha
Helix 2	AA2	G	122	126	Right-handed 310
Helix 3	AA3	G	335	354	Right-handed alpha
Helix 4	AA4	G	368	373	Right-handed alpha
Helix 5	AA5	G	425	429	Right-handed 310
Helix 6	AA6	G	475	480	Right-handed alpha
Helix 7	AA7	B	516	520	Right-handed alpha
Helix 8	AA8	B	537	542	Right-handed alpha
Helix 9	AA9	B	543	545	Right-handed 310
Helix 10	AB1	B	571	595	Right-handed alpha
Helix 11	AB2	B	620	624	Right-handed 310
Helix 12	AB3	B	627	636	Right-handed alpha
Helix 13	AB4	B	640	664	Right-handed alpha
Helix 14	AB5	H	83	87	Right-handed 310
Helix 15	AB6	L	79	83	Right-handed 310
Helix 16	AB7	h	83	87	Right-handed 310
Helix 17	AB8	A	57	63	Right-handed alpha
Helix 18	AB9	A	102	116	Right-handed alpha
Helix 19	AC1	A	122	126	Right-handed 310
Helix 20	AC2	A	335	354	Right-handed alpha
Helix 21	AC3	A	368	373	Right-handed alpha
Helix 22	AC4	A	425	429	Right-handed 310
Helix 23	AC5	A	475	480	Right-handed alpha
Helix 24	AC6	C	516	520	Right-handed alpha
Helix 25	AC7	C	529	535	Right-handed alpha
Helix 26	AC8	C	537	542	Right-handed alpha
Helix 27	AC9	C	543	545	Right-handed 310
Helix 28	AD1	C	571	595	Right-handed alpha
Helix 29	AD2	C	627	636	Right-handed alpha
Helix 30	AD3	C	640	664	Right-handed alpha
Helix 31	AD4	D	83	87	Right-handed 310
Helix 32	AD5	E	79	83	Right-handed 310
Helix 33	AD6	d	83	87	Right-handed 310
Helix 34	AD7	I	57	62	Right-handed alpha
Helix 35	AD8	I	102	116	Right-handed alpha
Helix 36	AD9	I	122	126	Right-handed 310
Helix 37	AE1	I	179	181	Right-handed 310
Helix 38	AE2	I	335	350	Right-handed alpha
Helix 39	AE3	I	368	373	Right-handed alpha
Helix 40	AE4	I	425	429	Right-handed 310
Helix 41	AE5	I	475	483	Right-handed alpha
Helix 42	AE6	J	516	520	Right-handed alpha
Helix 43	AE7	J	529	534	Right-handed alpha
Helix 44	AE8	J	537	543	Right-handed alpha
Helix 45	AE9	J	571	595	Right-handed alpha
Helix 46	AF1	J	627	636	Right-handed alpha
Helix 47	AF2	J	640	664	Right-handed alpha
Helix 48	AF3	K	83	87	Right-handed 310
Helix 49	AF4	M	79	83	Right-handed 310
Helix 50	AF5	k	61	64	Right-handed 310
Helix 51	AF6	k	83	87	Right-handed 310

There are 58 sheets in PDB entry 9Q3X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	495	498	first strand
Strand 2	G	35	39	anti-parallel
Strand 3	B	604	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	488	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	83	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	56	first strand
Strand 2	G	215	218	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	177	first strand
Strand 2	G	154	162	anti-parallel
Strand 3	G	129	133	anti-parallel
Strand 4	G	190	191	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	203	first strand
Strand 2	G	433	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	312	anti-parallel
Strand 3	G	329	334	anti-parallel
Strand 4	G	413	421	anti-parallel
Strand 5	G	381	385	anti-parallel
Strand 6	G	374	378	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	315	322	first strand
Strand 2	G	284	312	anti-parallel
Strand 3	G	441	455	anti-parallel
Strand 4	G	465	470	anti-parallel
Strand 5	G	358	361	parallel
Strand 6	G	394	395	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	21	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	35	39	anti-parallel
Strand 4	H	89	93	anti-parallel
Strand 5	H	107	108	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	66	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	103	105	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	34	38	anti-parallel
Strand 4	L	85	90	anti-parallel
Strand 5	L	97	98	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	4	7	first strand
Strand 2	h	19	24	anti-parallel
Strand 3	h	77	82	anti-parallel
Strand 4	h	67	72	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	58	59	first strand
Strand 2	h	46	51	anti-parallel
Strand 3	h	33	39	anti-parallel
Strand 4	h	88	97	anti-parallel
Strand 5	h	100	100	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	58	59	first strand
Strand 2	h	46	51	anti-parallel
Strand 3	h	33	39	anti-parallel
Strand 4	h	88	97	anti-parallel
Strand 5	h	105	107	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	100	100	first strand
Strand 2	h	100	100	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	10	13	first strand
Strand 2	l	102	106	parallel
Strand 3	l	85	89	anti-parallel
Strand 4	l	34	38	anti-parallel
Strand 5	l	45	48	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	19	23	first strand
Strand 2	l	71	75	anti-parallel
Strand 3	l	62	63	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	499	first strand
Strand 2	A	34	39	anti-parallel
Strand 3	C	604	610	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	227	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	215	218	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	243	244	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	177	first strand
Strand 2	A	154	162	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	433	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	297	anti-parallel
Strand 3	A	329	334	anti-parallel
Strand 4	A	413	421	anti-parallel
Strand 5	A	381	385	anti-parallel
Strand 6	A	374	378	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	297	anti-parallel
Strand 3	A	444	455	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	358	361	parallel
Strand 6	A	394	395	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	312	first strand
Strand 2	A	315	322	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	21	24	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	35	39	anti-parallel
Strand 4	D	89	93	anti-parallel
Strand 5	D	107	108	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	72	first strand
Strand 2	D	77	82	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	65	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	103	105	parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	45	49	anti-parallel
Strand 3	E	34	38	anti-parallel
Strand 4	E	85	90	anti-parallel
Strand 5	E	97	98	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	4	7	first strand
Strand 2	d	19	24	anti-parallel
Strand 3	d	77	82	anti-parallel
Strand 4	d	67	72	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	58	59	first strand
Strand 2	d	46	51	anti-parallel
Strand 3	d	33	38	anti-parallel
Strand 4	d	88	97	anti-parallel
Strand 5	d	100	100	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	58	59	first strand
Strand 2	d	46	51	anti-parallel
Strand 3	d	33	38	anti-parallel
Strand 4	d	88	97	anti-parallel
Strand 5	d	105	107	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	100	100	first strand
Strand 2	d	100	100	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	10	13	first strand
Strand 2	e	102	106	parallel
Strand 3	e	85	89	anti-parallel
Strand 4	e	34	38	anti-parallel
Strand 5	e	45	48	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	19	23	first strand
Strand 2	e	71	75	anti-parallel
Strand 3	e	62	63	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	495	498	first strand
Strand 2	I	35	39	anti-parallel
Strand 3	J	604	609	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	47	first strand
Strand 2	I	486	491	anti-parallel
Strand 3	I	223	227	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	55	56	first strand
Strand 2	I	75	76	parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	169	177	first strand
Strand 2	I	154	162	anti-parallel
Strand 3	I	129	133	anti-parallel
Strand 4	I	190	191	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	201	203	first strand
Strand 2	I	433	435	parallel
Strand 3	I	423	424	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	297	anti-parallel
Strand 3	I	329	334	anti-parallel
Strand 4	I	413	421	anti-parallel
Strand 5	I	381	385	anti-parallel
Strand 6	I	374	378	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	297	anti-parallel
Strand 3	I	444	455	anti-parallel
Strand 4	I	465	470	anti-parallel
Strand 5	I	358	361	parallel
Strand 6	I	394	395	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	302	312	first strand
Strand 2	I	315	322	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	21	24	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	57	59	first strand
Strand 2	K	46	51	anti-parallel
Strand 3	K	35	39	anti-parallel
Strand 4	K	89	93	anti-parallel
Strand 5	K	107	108	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	72	first strand
Strand 2	K	77	80	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	5	7	first strand
Strand 2	M	19	24	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	66	anti-parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	54	first strand
Strand 2	M	45	49	anti-parallel
Strand 3	M	34	38	anti-parallel
Strand 4	M	85	90	anti-parallel
Strand 5	M	97	98	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	4	7	first strand
Strand 2	k	19	24	anti-parallel
Strand 3	k	77	82	anti-parallel
Strand 4	k	67	72	anti-parallel

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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	58	59	first strand
Strand 2	k	46	51	anti-parallel
Strand 3	k	33	38	anti-parallel
Strand 4	k	88	97	anti-parallel
Strand 5	k	100	100	anti-parallel

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There are 5 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	58	59	first strand
Strand 2	k	46	51	anti-parallel
Strand 3	k	33	38	anti-parallel
Strand 4	k	88	97	anti-parallel
Strand 5	k	105	107	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	100	100	first strand
Strand 2	k	100	100	anti-parallel

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There are 5 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	10	13	first strand
Strand 2	m	102	106	parallel
Strand 3	m	85	89	anti-parallel
Strand 4	m	34	38	anti-parallel
Strand 5	m	45	46	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	19	23	first strand
Strand 2	m	71	75	anti-parallel
Strand 3	m	62	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q3X

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q3X