Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q5T entry

There are 3 chains in PDB entry 9Q5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 20LYS 240
L
 GLN 1GLY 211
A
 GLY 1LEU 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9Q5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
47 51Right-handed 310
Helix 2
AA2
H
81 84Right-handed 310
Helix 3
AA3
H
106 110Right-handed 310
Helix 4
AA4
H
182 184Right-handed 310
Helix 5
AA5
H
227 230Right-handed 310
Helix 6
AA6
L
78 82Right-handed 310
Helix 7
AA7
L
120 127Right-handed alpha
Helix 8
AA8
L
182 187Right-handed alpha
Helix 9
AA9
A
4 9Right-handed alpha
Helix 10
AB1
A
12 20Right-handed alpha
Helix 11
AB2
A
41 47Right-handed alpha
Helix 12
AB3
A
50 52Right-handed 310
Helix 13
AB4
A
435 441Right-handed 310
Helix 14
AB5
A
445 449Right-handed 310
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There are 14 sheets in PDB entry 9Q5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
22 25first strand
Strand 2
H
37 44anti-parallel
Strand 3
H
97 102anti-parallel
Strand 4
H
87 92anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 31first strand
Strand 2
H
133 137parallel
Strand 3
H
111 119anti-parallel
Strand 4
H
53 58anti-parallel
Strand 5
H
64 70anti-parallel
Strand 6
H
77 79anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 31first strand
Strand 2
H
133 137parallel
Strand 3
H
111 119anti-parallel
Strand 4
H
125 129anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
146 150first strand
Strand 2
H
162 171anti-parallel
Strand 3
H
202 210anti-parallel
Strand 4
H
189 191anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
146 150first strand
Strand 2
H
162 171anti-parallel
Strand 3
H
202 210anti-parallel
Strand 4
H
195 196anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
177 180first strand
Strand 2
H
220 226anti-parallel
Strand 3
H
231 237anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
69 74anti-parallel
Strand 4
L
61 66anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
101 105parallel
Strand 3
L
83 89anti-parallel
Strand 4
L
33 37anti-parallel
Strand 5
L
44 48anti-parallel
Strand 6
L
52 53anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
101 105parallel
Strand 3
L
83 89anti-parallel
Strand 4
L
96 97anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
113 117first strand
Strand 2
L
128 138anti-parallel
Strand 3
L
172 181anti-parallel
Strand 4
L
158 162anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
144 149first strand
Strand 2
L
190 196anti-parallel
Strand 3
L
204 209anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
54 55anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
459 462anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 467first strand
Strand 2
A
473 474anti-parallel
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