Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q5V entry

There are 10 chains in PDB entry 9Q5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 24	VAL 104
B	GLY 115	SER 486
C	GLN 24	VAL 104
D	GLY 115	SER 486
E	GLN 24	VAL 104
F	GLY 115	SER 486
G	GLN 0	LYS 105
I	GLN 1	THR 120
J	ASP 1	LYS 107
K	ASP 1	VAL 119

There are 59 helices in PDB entry 9Q5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	31	Right-handed alpha
Helix 2	AA2	A	32	34	Right-handed 310
Helix 3	AA3	A	62	66	Right-handed 310
Helix 4	AA4	A	69	96	Right-handed alpha
Helix 5	AA5	B	120	123	Right-handed 310
Helix 6	AA6	B	128	141	Right-handed alpha
Helix 7	AA7	B	143	154	Right-handed alpha
Helix 8	AA8	B	155	157	Right-handed 310
Helix 9	AA9	B	178	185	Right-handed alpha
Helix 10	AB1	B	194	218	Right-handed alpha
Helix 11	AB2	B	242	249	Right-handed alpha
Helix 12	AB3	B	255	262	Right-handed alpha
Helix 13	AB4	B	330	332	Right-handed 310
Helix 14	AB5	B	352	361	Right-handed alpha
Helix 15	AB6	B	362	366	Right-handed 310
Helix 16	AB7	B	442	446	Right-handed 310
Helix 17	AB8	B	455	473	Right-handed alpha
Helix 18	AB9	B	473	479	Right-handed alpha
Helix 19	AC1	B	481	486	Right-handed alpha
Helix 20	AC2	C	26	33	Right-handed alpha
Helix 21	AC3	C	62	66	Right-handed 310
Helix 22	AC4	C	69	96	Right-handed alpha
Helix 23	AC5	C	102	104	Right-handed 310
Helix 24	AC6	D	120	124	Right-handed alpha
Helix 25	AC7	D	127	141	Right-handed alpha
Helix 26	AC8	D	143	157	Right-handed alpha
Helix 27	AC9	D	178	185	Right-handed alpha
Helix 28	AD1	D	194	218	Right-handed alpha
Helix 29	AD2	D	232	236	Right-handed 310
Helix 30	AD3	D	242	250	Right-handed alpha
Helix 31	AD4	D	255	262	Right-handed alpha
Helix 32	AD5	D	330	332	Right-handed 310
Helix 33	AD6	D	352	361	Right-handed alpha
Helix 34	AD7	D	362	366	Right-handed 310
Helix 35	AD8	D	455	473	Right-handed alpha
Helix 36	AD9	D	473	479	Right-handed alpha
Helix 37	AE1	D	479	484	Right-handed alpha
Helix 38	AE2	E	26	32	Right-handed alpha
Helix 39	AE3	E	69	96	Right-handed alpha
Helix 40	AE4	E	102	104	Right-handed 310
Helix 41	AE5	F	120	124	Right-handed alpha
Helix 42	AE6	F	127	141	Right-handed alpha
Helix 43	AE7	F	143	156	Right-handed alpha
Helix 44	AE8	F	178	185	Right-handed alpha
Helix 45	AE9	F	189	193	Right-handed 310
Helix 46	AF1	F	194	218	Right-handed alpha
Helix 47	AF2	F	242	250	Right-handed alpha
Helix 48	AF3	F	255	262	Right-handed alpha
Helix 49	AF4	F	352	360	Right-handed alpha
Helix 50	AF5	F	362	366	Right-handed 310
Helix 51	AF6	F	444	446	Right-handed 310
Helix 52	AF7	F	455	473	Right-handed alpha
Helix 53	AF8	F	473	479	Right-handed alpha
Helix 54	AF9	F	479	486	Right-handed alpha
Helix 55	AG1	G	77	81	Right-handed 310
Helix 56	AG2	I	87	91	Right-handed 310
Helix 57	AG3	J	79	83	Right-handed 310
Helix 58	AG4	K	62	66	Right-handed 310
Helix 59	AG5	K	87	91	Right-handed 310

There are 24 sheets in PDB entry 9Q5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	172	176	anti-parallel
Strand 3	A	36	57	parallel
Strand 4	B	278	300	anti-parallel
Strand 5	B	318	322	anti-parallel
Strand 6	B	325	328	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	230	first strand
Strand 2	B	266	273	anti-parallel
Strand 3	B	278	300	anti-parallel
Strand 4	A	36	57	anti-parallel
Strand 5	B	340	343	parallel
Strand 6	B	334	337	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	B	116	118	anti-parallel
Strand 3	F	428	431	parallel
Strand 4	F	422	425	anti-parallel
Strand 5	F	395	397	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	F	379	382	anti-parallel
Strand 3	F	385	388	anti-parallel
Strand 4	F	410	415	anti-parallel
Strand 5	F	441	442	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	309	313	anti-parallel
Strand 3	B	368	370	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	413	415	first strand
Strand 2	B	385	388	anti-parallel
Strand 3	B	379	382	anti-parallel
Strand 4	D	125	126	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	422	425	anti-parallel
Strand 3	B	428	431	anti-parallel
Strand 4	D	116	119	parallel
Strand 5	C	98	100	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	172	176	anti-parallel
Strand 3	C	35	57	parallel
Strand 4	D	278	301	anti-parallel
Strand 5	D	318	322	anti-parallel
Strand 6	D	325	327	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	230	first strand
Strand 2	D	266	273	anti-parallel
Strand 3	D	278	301	anti-parallel
Strand 4	C	35	57	anti-parallel
Strand 5	D	340	343	parallel
Strand 6	D	334	337	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	306	first strand
Strand 2	D	309	313	anti-parallel
Strand 3	D	368	370	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	442	first strand
Strand 2	D	410	415	anti-parallel
Strand 3	D	385	388	anti-parallel
Strand 4	D	379	382	anti-parallel
Strand 5	F	125	126	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	397	first strand
Strand 2	D	422	425	anti-parallel
Strand 3	D	428	431	anti-parallel
Strand 4	F	116	119	parallel
Strand 5	E	98	100	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	334	337	first strand
Strand 2	F	340	343	anti-parallel
Strand 3	E	36	48	parallel
Strand 4	F	286	300	anti-parallel
Strand 5	F	318	322	anti-parallel
Strand 6	F	325	329	anti-parallel
Strand 7	F	348	349	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	164	first strand
Strand 2	F	172	176	anti-parallel
Strand 3	E	52	57	parallel
Strand 4	F	278	283	anti-parallel
Strand 5	F	266	273	anti-parallel
Strand 6	F	228	230	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	306	first strand
Strand 2	F	309	313	anti-parallel
Strand 3	F	368	370	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	68	73	anti-parallel
Strand 4	G	60	65	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	12	first strand
Strand 2	G	100	104	parallel
Strand 3	G	83	87	anti-parallel
Strand 4	G	32	36	anti-parallel
Strand 5	G	43	47	anti-parallel
Strand 6	G	51	52	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	5	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	45	51	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	93	97	anti-parallel
Strand 5	I	114	115	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	6	first strand
Strand 2	J	19	29	anti-parallel
Strand 3	J	62	75	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	54	first strand
Strand 2	J	45	49	anti-parallel
Strand 3	J	33	38	anti-parallel
Strand 4	J	85	90	anti-parallel
Strand 5	J	102	103	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	16	25	anti-parallel
Strand 3	K	78	86	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	58	60	first strand
Strand 2	K	45	53	anti-parallel
Strand 3	K	34	41	anti-parallel
Strand 4	K	98	99	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	58	60	first strand
Strand 2	K	45	53	anti-parallel
Strand 3	K	34	41	anti-parallel
Strand 4	K	93	95	anti-parallel
Strand 5	K	115	116	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q5V