Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q5W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q5W entry

There are 4 chains in PDB entry 9Q5W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LEU 306	ASP 1014
B	U 1	G 29
A	C 1	A 29
I	LEU 306	ALA 745

There are 52 helices in PDB entry 9Q5W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	309	321	Right-handed alpha
Helix 2	AA2	C	334	353	Right-handed alpha
Helix 3	AA3	C	365	376	Right-handed alpha
Helix 4	AA4	C	376	381	Right-handed alpha
Helix 5	AA5	C	394	398	Right-handed 310
Helix 6	AA6	C	399	407	Right-handed alpha
Helix 7	AA7	C	414	427	Right-handed alpha
Helix 8	AA8	C	445	448	Right-handed 310
Helix 9	AA9	C	452	474	Right-handed alpha
Helix 10	AB1	C	498	513	Right-handed alpha
Helix 11	AB2	C	524	532	Right-handed alpha
Helix 12	AB3	C	548	566	Right-handed alpha
Helix 13	AB4	C	575	593	Right-handed alpha
Helix 14	AB5	C	594	617	Right-handed alpha
Helix 15	AB6	C	618	641	Right-handed alpha
Helix 16	AB7	C	670	692	Right-handed alpha
Helix 17	AB8	C	698	713	Right-handed alpha
Helix 18	AB9	C	727	741	Right-handed alpha
Helix 19	AC1	C	741	748	Right-handed alpha
Helix 20	AC2	C	767	781	Right-handed alpha
Helix 21	AC3	C	812	821	Right-handed alpha
Helix 22	AC4	C	839	863	Right-handed alpha
Helix 23	AC5	C	865	891	Right-handed alpha
Helix 24	AC6	C	899	901	Right-handed 310
Helix 25	AC7	C	932	939	Right-handed alpha
Helix 26	AC8	C	1002	1006	Right-handed 310
Helix 27	AC9	I	309	321	Right-handed alpha
Helix 28	AD1	I	334	353	Right-handed alpha
Helix 29	AD2	I	365	376	Right-handed alpha
Helix 30	AD3	I	376	381	Right-handed alpha
Helix 31	AD4	I	394	398	Right-handed 310
Helix 32	AD5	I	399	405	Right-handed alpha
Helix 33	AD6	I	414	427	Right-handed alpha
Helix 34	AD7	I	445	448	Right-handed 310
Helix 35	AD8	I	452	474	Right-handed alpha
Helix 36	AD9	I	498	513	Right-handed alpha
Helix 37	AE1	I	524	532	Right-handed alpha
Helix 38	AE2	I	548	565	Right-handed alpha
Helix 39	AE3	I	575	593	Right-handed alpha
Helix 40	AE4	I	594	617	Right-handed alpha
Helix 41	AE5	I	619	642	Right-handed alpha
Helix 42	AE6	I	670	693	Right-handed alpha
Helix 43	AE7	I	698	714	Right-handed alpha
Helix 44	AE8	I	727	741	Right-handed alpha
Helix 45	AE9	I	741	748	Right-handed alpha
Helix 46	AF1	I	767	780	Right-handed alpha
Helix 47	AF2	I	812	823	Right-handed alpha
Helix 48	AF3	I	839	863	Right-handed alpha
Helix 49	AF4	I	865	891	Right-handed alpha
Helix 50	AF5	I	899	901	Right-handed 310
Helix 51	AF6	I	932	939	Right-handed alpha
Helix 52	AF7	I	983	985	Right-handed 310

There are 11 sheets in PDB entry 9Q5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	390	first strand
Strand 2	C	409	413	parallel
Strand 3	C	359	363	parallel
Strand 4	C	439	443	parallel
Strand 5	C	483	488	parallel
Strand 6	C	325	328	parallel
Strand 7	C	517	519	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	539	first strand
Strand 2	C	829	833	parallel
Strand 3	C	803	807	parallel
Strand 4	C	721	725	parallel
Strand 5	C	787	790	parallel
Strand 6	C	751	754	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	913	916	first strand
Strand 2	C	903	907	anti-parallel
Strand 3	C	987	991	anti-parallel
Strand 4	C	996	998	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	921	923	first strand
Strand 2	C	927	929	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	940	941	first strand
Strand 2	C	959	961	anti-parallel
Strand 3	C	967	974	anti-parallel
Strand 4	C	977	982	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	387	390	first strand
Strand 2	I	409	413	parallel
Strand 3	I	359	363	parallel
Strand 4	I	439	443	parallel
Strand 5	I	483	488	parallel
Strand 6	I	325	328	parallel
Strand 7	I	517	519	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	536	542	first strand
Strand 2	I	829	835	parallel
Strand 3	I	803	807	parallel
Strand 4	I	721	725	parallel
Strand 5	I	787	790	parallel
Strand 6	I	751	754	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	913	916	first strand
Strand 2	I	903	907	anti-parallel
Strand 3	I	987	991	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	920	923	first strand
Strand 2	I	927	930	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	940	942	first strand
Strand 2	I	959	961	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	971	974	first strand
Strand 2	I	977	980	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q5W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q5W