Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q68

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q68 entry

There are 6 chains in PDB entry 9Q68 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 20	PRO 239
L	GLU 20	GLU 233
A	ASN 3	LEU 475
E	GLN 20	PRO 239
F	GLU 20	CYS 234
B	GLY 1	THR 473

There are 27 helices in PDB entry 9Q68. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	83	85	Right-handed 310
Helix 2	AA2	H	93	95	Right-handed 310
Helix 3	AA3	H	106	110	Right-handed 310
Helix 4	AA4	H	119	123	Right-handed 310
Helix 5	AA5	H	182	184	Right-handed 310
Helix 6	AA6	H	213	215	Right-handed 310
Helix 7	AA7	H	227	230	Right-handed 310
Helix 8	AA8	L	98	102	Right-handed 310
Helix 9	AA9	L	141	147	Right-handed alpha
Helix 10	AB1	L	203	209	Right-handed alpha
Helix 11	AB2	A	4	8	Right-handed alpha
Helix 12	AB3	A	12	18	Right-handed alpha
Helix 13	AB4	A	41	47	Right-handed alpha
Helix 14	AB5	A	50	52	Right-handed 310
Helix 15	AB6	A	435	441	Right-handed 310
Helix 16	AB7	E	81	85	Right-handed 310
Helix 17	AB8	E	106	110	Right-handed 310
Helix 18	AB9	E	119	123	Right-handed 310
Helix 19	AC1	E	153	157	Right-handed 310
Helix 20	AC2	E	227	230	Right-handed 310
Helix 21	AC3	F	98	102	Right-handed 310
Helix 22	AC4	F	141	147	Right-handed alpha
Helix 23	AC5	F	203	208	Right-handed alpha
Helix 24	AC6	B	12	18	Right-handed alpha
Helix 25	AC7	B	41	47	Right-handed alpha
Helix 26	AC8	B	50	52	Right-handed 310
Helix 27	AC9	B	435	441	Right-handed 310

There are 23 sheets in PDB entry 9Q68. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	25	first strand
Strand 2	H	37	44	anti-parallel
Strand 3	H	97	102	anti-parallel
Strand 4	H	87	92	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	31	first strand
Strand 2	H	133	137	parallel
Strand 3	H	111	118	anti-parallel
Strand 4	H	52	58	anti-parallel
Strand 5	H	65	71	anti-parallel
Strand 6	H	77	79	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	150	first strand
Strand 2	H	161	171	anti-parallel
Strand 3	H	202	211	anti-parallel
Strand 4	H	189	191	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	150	first strand
Strand 2	H	161	171	anti-parallel
Strand 3	H	202	211	anti-parallel
Strand 4	H	195	196	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	177	180	first strand
Strand 2	H	221	226	anti-parallel
Strand 3	H	231	236	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	23	26	first strand
Strand 2	L	38	44	anti-parallel
Strand 3	L	89	94	anti-parallel
Strand 4	L	81	86	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	122	126	parallel
Strand 3	L	104	109	anti-parallel
Strand 4	L	52	57	anti-parallel
Strand 5	L	64	68	anti-parallel
Strand 6	L	72	73	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	134	138	first strand
Strand 2	L	149	159	anti-parallel
Strand 3	L	193	202	anti-parallel
Strand 4	L	179	183	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	164	170	first strand
Strand 2	L	211	218	anti-parallel
Strand 3	L	225	230	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	23	26	anti-parallel
Strand 3	A	54	55	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	456	first strand
Strand 2	A	459	462	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	467	first strand
Strand 2	A	473	474	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	25	first strand
Strand 2	E	37	44	anti-parallel
Strand 3	E	97	102	anti-parallel
Strand 4	E	87	92	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	133	137	parallel
Strand 3	E	111	118	anti-parallel
Strand 4	E	52	58	anti-parallel
Strand 5	E	65	71	anti-parallel
Strand 6	E	77	79	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	150	first strand
Strand 2	E	161	171	anti-parallel
Strand 3	E	202	211	anti-parallel
Strand 4	E	189	191	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	150	first strand
Strand 2	E	161	171	anti-parallel
Strand 3	E	202	211	anti-parallel
Strand 4	E	195	196	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	180	first strand
Strand 2	E	220	226	anti-parallel
Strand 3	E	231	237	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	26	first strand
Strand 2	F	38	44	anti-parallel
Strand 3	F	89	94	anti-parallel
Strand 4	F	81	86	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	32	first strand
Strand 2	F	122	126	parallel
Strand 3	F	104	109	anti-parallel
Strand 4	F	52	57	anti-parallel
Strand 5	F	64	68	anti-parallel
Strand 6	F	72	73	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	138	first strand
Strand 2	F	149	159	anti-parallel
Strand 3	F	193	202	anti-parallel
Strand 4	F	179	183	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	173	174	first strand
Strand 2	F	165	170	anti-parallel
Strand 3	F	211	217	anti-parallel
Strand 4	F	225	230	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	23	26	anti-parallel
Strand 3	B	54	55	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	456	first strand
Strand 2	B	459	462	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q68

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q68