Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q6B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q6B entry

There are 7 chains in PDB entry 9Q6B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	VAL 118
B	SER 1	LEU 106
C	GLN 1	VAL 116
D	SER 1	LEU 108
E	GLN 1	VAL 120
F	SER 1	LEU 108
G	VAL 925	ASN 1086

There are 8 helices in PDB entry 9Q6B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	86	90	Right-handed 310
Helix 2	AA2	B	26	30	Right-handed 310
Helix 3	AA3	C	86	90	Right-handed 310
Helix 4	AA4	D	25	29	Right-handed 310
Helix 5	AA5	D	78	82	Right-handed 310
Helix 6	AA6	E	88	92	Right-handed 310
Helix 7	AA7	F	78	82	Right-handed 310
Helix 8	AA8	G	941	950	Right-handed 310

There are 21 sheets in PDB entry 9Q6B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	A	17	25	anti-parallel
Strand 3	A	77	83	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	46	52	anti-parallel
Strand 3	A	33	39	anti-parallel
Strand 4	A	91	96	anti-parallel
Strand 5	A	114	116	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	101	105	parallel
Strand 3	B	84	91	anti-parallel
Strand 4	B	33	37	anti-parallel
Strand 5	B	44	47	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	101	105	parallel
Strand 3	B	84	91	anti-parallel
Strand 4	B	94	97	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	61	66	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	46	52	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	91	94	anti-parallel
Strand 5	C	112	114	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	69	74	anti-parallel
Strand 4	D	61	66	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	103	107	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	33	37	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	103	107	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	97	99	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	79	84	anti-parallel
Strand 4	E	69	74	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	61	first strand
Strand 2	E	48	53	anti-parallel
Strand 3	E	36	41	anti-parallel
Strand 4	E	93	98	anti-parallel
Strand 5	E	116	118	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	106	107	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	69	74	anti-parallel
Strand 3	F	61	66	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	47	first strand
Strand 2	F	33	37	anti-parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	97	99	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	47	first strand
Strand 2	F	33	37	anti-parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	103	104	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	930	933	first strand
Strand 2	G	936	939	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	954	956	first strand
Strand 2	G	965	967	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	971	973	first strand
Strand 2	G	978	980	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	987	992	first strand
Strand 2	G	1038	1045	anti-parallel
Strand 3	G	1049	1058	anti-parallel
Strand 4	G	1061	1070	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	998	1001	first strand
Strand 2	G	1005	1010	anti-parallel
Strand 3	G	1015	1020	anti-parallel
Strand 4	G	1026	1030	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q6B

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q6B