Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q6H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q6H entry

There are 5 chains in PDB entry 9Q6H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 25	LEU 609
B	ALA 22	SER 152
C	ALA 22	GLU 146
D	ALA 22	GLU 145
E	ALA 17	SER 144

There are 43 helices in PDB entry 9Q6H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	55	Right-handed alpha
Helix 2	AA2	A	59	80	Right-handed alpha
Helix 3	AA3	A	89	100	Right-handed alpha
Helix 4	AA4	A	103	108	Right-handed alpha
Helix 5	AA5	A	108	117	Right-handed alpha
Helix 6	AA6	A	120	130	Right-handed alpha
Helix 7	AA7	A	143	154	Right-handed alpha
Helix 8	AA8	A	154	170	Right-handed alpha
Helix 9	AA9	A	174	193	Right-handed alpha
Helix 10	AB1	A	197	230	Right-handed alpha
Helix 11	AB2	A	231	247	Right-handed alpha
Helix 12	AB3	A	251	271	Right-handed alpha
Helix 13	AB4	A	273	291	Right-handed alpha
Helix 14	AB5	A	291	296	Right-handed alpha
Helix 15	AB6	A	298	305	Right-handed alpha
Helix 16	AB7	A	306	317	Right-handed alpha
Helix 17	AB8	A	329	334	Right-handed alpha
Helix 18	AB9	A	338	346	Right-handed alpha
Helix 19	AC1	A	346	362	Right-handed alpha
Helix 20	AC2	A	366	386	Right-handed alpha
Helix 21	AC3	A	389	395	Right-handed alpha
Helix 22	AC4	A	396	422	Right-handed alpha
Helix 23	AC5	A	425	439	Right-handed alpha
Helix 24	AC6	A	443	462	Right-handed alpha
Helix 25	AC7	A	465	491	Right-handed alpha
Helix 26	AC8	A	494	503	Right-handed alpha
Helix 27	AC9	A	507	515	Right-handed alpha
Helix 28	AD1	A	527	532	Right-handed alpha
Helix 29	AD2	A	535	540	Right-handed alpha
Helix 30	AD3	A	541	560	Right-handed alpha
Helix 31	AD4	A	564	585	Right-handed alpha
Helix 32	AD5	A	587	608	Right-handed alpha
Helix 33	AD6	B	50	52	Right-handed 310
Helix 34	AD7	B	109	113	Right-handed 310
Helix 35	AD8	B	136	140	Right-handed 310
Helix 36	AD9	C	96	98	Right-handed 310
Helix 37	AE1	C	109	113	Right-handed 310
Helix 38	AE2	C	129	133	Right-handed 310
Helix 39	AE3	D	47	54	Right-handed alpha
Helix 40	AE4	D	109	113	Right-handed 310
Helix 41	AE5	D	123	129	Right-handed alpha
Helix 42	AE6	E	43	49	Right-handed 310
Helix 43	AE7	E	78	82	Right-handed 310

There are 13 sheets in PDB entry 9Q6H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	40	46	anti-parallel
Strand 3	B	100	105	anti-parallel
Strand 4	B	90	95	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	147	151	parallel
Strand 3	B	114	122	anti-parallel
Strand 4	B	54	60	anti-parallel
Strand 5	B	68	73	anti-parallel
Strand 6	B	80	81	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	147	151	parallel
Strand 3	B	114	122	anti-parallel
Strand 4	B	142	143	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	40	46	anti-parallel
Strand 3	C	100	105	anti-parallel
Strand 4	C	90	95	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	140	145	parallel
Strand 3	C	114	122	anti-parallel
Strand 4	C	54	61	anti-parallel
Strand 5	C	68	73	anti-parallel
Strand 6	C	80	81	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	140	145	parallel
Strand 3	C	114	122	anti-parallel
Strand 4	C	135	136	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	29	first strand
Strand 2	D	43	45	anti-parallel
Strand 3	D	100	105	anti-parallel
Strand 4	D	40	41	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	29	first strand
Strand 2	D	43	45	anti-parallel
Strand 3	D	100	105	anti-parallel
Strand 4	D	91	95	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	34	first strand
Strand 2	D	139	143	parallel
Strand 3	D	114	120	anti-parallel
Strand 4	D	57	61	anti-parallel
Strand 5	D	68	72	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	34	first strand
Strand 2	D	139	143	parallel
Strand 3	D	114	120	anti-parallel
Strand 4	D	134	135	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	24	first strand
Strand 2	E	35	41	anti-parallel
Strand 3	E	95	100	anti-parallel
Strand 4	E	85	90	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	29	first strand
Strand 2	E	139	143	parallel
Strand 3	E	109	115	anti-parallel
Strand 4	E	51	56	anti-parallel
Strand 5	E	63	68	anti-parallel
Strand 6	E	75	76	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	29	first strand
Strand 2	E	139	143	parallel
Strand 3	E	109	115	anti-parallel
Strand 4	E	134	135	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q6H

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q6H