Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q6N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q6N entry

There are 5 chains in PDB entry 9Q6N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 25GLY 608
B
 ALA 22GLU 150
C
 VAL 24GLU 146
D
 GLN 20GLU 141
E
 ALA 17GLU 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9Q6N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 39Right-handed alpha
Helix 2
AA2
A
40 55Right-handed alpha
Helix 3
AA3
A
59 80Right-handed alpha
Helix 4
AA4
A
89 100Right-handed alpha
Helix 5
AA5
A
110 116Right-handed alpha
Helix 6
AA6
A
118 129Right-handed alpha
Helix 7
AA7
A
143 170Right-handed alpha
Helix 8
AA8
A
174 193Right-handed alpha
Helix 9
AA9
A
197 230Right-handed alpha
Helix 10
AB1
A
232 247Right-handed alpha
Helix 11
AB2
A
251 271Right-handed alpha
Helix 12
AB3
A
273 291Right-handed alpha
Helix 13
AB4
A
291 296Right-handed alpha
Helix 14
AB5
A
298 304Right-handed alpha
Helix 15
AB6
A
306 317Right-handed alpha
Helix 16
AB7
A
329 334Right-handed alpha
Helix 17
AB8
A
338 346Right-handed alpha
Helix 18
AB9
A
346 361Right-handed alpha
Helix 19
AC1
A
366 386Right-handed alpha
Helix 20
AC2
A
389 395Right-handed alpha
Helix 21
AC3
A
396 399Right-handed 310
Helix 22
AC4
A
400 423Right-handed alpha
Helix 23
AC5
A
423 439Right-handed alpha
Helix 24
AC6
A
443 462Right-handed alpha
Helix 25
AC7
A
465 490Right-handed alpha
Helix 26
AC8
A
494 504Right-handed alpha
Helix 27
AC9
A
507 515Right-handed alpha
Helix 28
AD1
A
527 531Right-handed 310
Helix 29
AD2
A
534 540Right-handed 310
Helix 30
AD3
A
541 560Right-handed alpha
Helix 31
AD4
A
565 584Right-handed alpha
Helix 32
AD5
A
587 608Right-handed alpha
Helix 33
AD6
B
50 52Right-handed 310
Helix 34
AD7
B
109 113Right-handed 310
Helix 35
AD8
B
129 133Right-handed 310
Helix 36
AD9
C
50 54Right-handed 310
Helix 37
AE1
C
95 98Right-handed 310
Helix 38
AE2
C
129 133Right-handed 310
Helix 39
AE3
D
123 127Right-handed 310
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There are 9 sheets in PDB entry 9Q6N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
144 149parallel
Strand 3
B
114 122anti-parallel
Strand 4
B
54 61anti-parallel
Strand 5
B
67 73anti-parallel
Strand 6
B
80 81anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
101 102anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 29first strand
Strand 2
C
40 45anti-parallel
Strand 3
C
100 105anti-parallel
Strand 4
C
91 93anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 35first strand
Strand 2
C
140 145parallel
Strand 3
C
115 120anti-parallel
Strand 4
C
56 61anti-parallel
Strand 5
C
67 73anti-parallel
Strand 6
C
80 82anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 35first strand
Strand 2
C
140 145parallel
Strand 3
C
115 120anti-parallel
Strand 4
C
135 136anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 37first strand
Strand 2
D
94 102anti-parallel
Strand 3
D
84 89anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 64first strand
Strand 2
D
51 55anti-parallel
Strand 3
D
111 114anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 24first strand
Strand 2
E
37 40anti-parallel
Strand 3
E
94 96anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
27 28first strand
Strand 2
E
127 131parallel
Strand 3
E
108 114anti-parallel
Strand 4
E
48 51anti-parallel
Strand 5
E
64 67anti-parallel
Strand 6
E
71 75anti-parallel
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