Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q6W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q6W entry

There are 3 chains in PDB entry 9Q6W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -4LEU 347
B
 ALA -4MET 346
C
 ALA -4LEU 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9Q6W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 13Right-handed alpha
Helix 2
AA2
A
42 52Right-handed alpha
Helix 3
AA3
A
55 66Right-handed alpha
Helix 4
AA4
A
103 108Right-handed alpha
Helix 5
AA5
A
111 118Right-handed alpha
Helix 6
AA6
A
133 149Right-handed alpha
Helix 7
AA7
A
182 191Right-handed alpha
Helix 8
AA8
A
205 219Right-handed alpha
Helix 9
AA9
A
230 241Right-handed alpha
Helix 10
AB1
A
243 245Right-handed 310
Helix 11
AB2
A
246 257Right-handed alpha
Helix 12
AB3
A
285 295Right-handed alpha
Helix 13
AB4
A
296 298Right-handed 310
Helix 14
AB5
A
299 307Right-handed alpha
Helix 15
AB6
A
314 325Right-handed alpha
Helix 16
AB7
A
329 336Right-handed alpha
Helix 17
AB8
A
339 347Right-handed alpha
Helix 18
AB9
B
-2 13Right-handed alpha
Helix 19
AC1
B
42 52Right-handed alpha
Helix 20
AC2
B
55 66Right-handed alpha
Helix 21
AC3
B
103 108Right-handed alpha
Helix 22
AC4
B
111 118Right-handed alpha
Helix 23
AC5
B
133 149Right-handed alpha
Helix 24
AC6
B
182 191Right-handed alpha
Helix 25
AC7
B
205 219Right-handed alpha
Helix 26
AC8
B
230 241Right-handed alpha
Helix 27
AC9
B
243 245Right-handed 310
Helix 28
AD1
B
246 257Right-handed alpha
Helix 29
AD2
B
285 295Right-handed alpha
Helix 30
AD3
B
296 298Right-handed 310
Helix 31
AD4
B
299 307Right-handed alpha
Helix 32
AD5
B
314 325Right-handed alpha
Helix 33
AD6
B
329 336Right-handed alpha
Helix 34
AD7
B
339 346Right-handed alpha
Helix 35
AD8
C
-2 13Right-handed alpha
Helix 36
AD9
C
42 52Right-handed alpha
Helix 37
AE1
C
55 66Right-handed alpha
Helix 38
AE2
C
103 108Right-handed alpha
Helix 39
AE3
C
111 118Right-handed alpha
Helix 40
AE4
C
133 149Right-handed alpha
Helix 41
AE5
C
182 191Right-handed alpha
Helix 42
AE6
C
205 219Right-handed alpha
Helix 43
AE7
C
230 241Right-handed alpha
Helix 44
AE8
C
243 245Right-handed 310
Helix 45
AE9
C
246 257Right-handed alpha
Helix 46
AF1
C
285 295Right-handed alpha
Helix 47
AF2
C
296 298Right-handed 310
Helix 48
AF3
C
299 307Right-handed alpha
Helix 49
AF4
C
314 325Right-handed alpha
Helix 50
AF5
C
329 336Right-handed alpha
Helix 51
AF6
C
341 347Right-handed alpha
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There are 6 sheets in PDB entry 9Q6W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
26 29anti-parallel
Strand 3
A
17 21anti-parallel
Strand 4
A
89 96anti-parallel
Strand 5
A
77 86anti-parallel
Strand 6
A
67 74anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 175first strand
Strand 2
A
151 157parallel
Strand 3
A
197 200parallel
Strand 4
A
221 226parallel
Strand 5
A
122 128parallel
Strand 6
A
258 268parallel
Strand 7
A
275 283anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
26 29anti-parallel
Strand 3
B
17 21anti-parallel
Strand 4
B
89 96anti-parallel
Strand 5
B
77 86anti-parallel
Strand 6
B
67 74anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 175first strand
Strand 2
B
151 157parallel
Strand 3
B
197 200parallel
Strand 4
B
221 226parallel
Strand 5
B
122 128parallel
Strand 6
B
258 268parallel
Strand 7
B
275 283anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 37first strand
Strand 2
C
26 29anti-parallel
Strand 3
C
17 21anti-parallel
Strand 4
C
89 96anti-parallel
Strand 5
C
77 86anti-parallel
Strand 6
C
67 74anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 175first strand
Strand 2
C
151 157parallel
Strand 3
C
197 200parallel
Strand 4
C
221 226parallel
Strand 5
C
122 128parallel
Strand 6
C
258 268parallel
Strand 7
C
275 283anti-parallel
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