Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q6Y entry

There are 4 chains in PDB entry 9Q6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 25LEU 609
B
 HIS 18GLU 148
C
 ALA 22PRO 146
E
 ALA 22LYS 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9Q6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 38Right-handed alpha
Helix 2
AA2
A
40 55Right-handed alpha
Helix 3
AA3
A
59 80Right-handed alpha
Helix 4
AA4
A
89 99Right-handed alpha
Helix 5
AA5
A
108 116Right-handed alpha
Helix 6
AA6
A
118 130Right-handed alpha
Helix 7
AA7
A
143 154Right-handed alpha
Helix 8
AA8
A
154 169Right-handed alpha
Helix 9
AA9
A
174 195Right-handed alpha
Helix 10
AB1
A
197 247Right-handed alpha
Helix 11
AB2
A
251 272Right-handed alpha
Helix 12
AB3
A
273 291Right-handed alpha
Helix 13
AB4
A
291 296Right-handed alpha
Helix 14
AB5
A
298 304Right-handed alpha
Helix 15
AB6
A
306 317Right-handed alpha
Helix 16
AB7
A
329 334Right-handed alpha
Helix 17
AB8
A
338 346Right-handed alpha
Helix 18
AB9
A
347 362Right-handed alpha
Helix 19
AC1
A
366 385Right-handed alpha
Helix 20
AC2
A
389 394Right-handed alpha
Helix 21
AC3
A
396 423Right-handed alpha
Helix 22
AC4
A
425 439Right-handed alpha
Helix 23
AC5
A
443 462Right-handed alpha
Helix 24
AC6
A
465 491Right-handed alpha
Helix 25
AC7
A
494 503Right-handed alpha
Helix 26
AC8
A
507 515Right-handed alpha
Helix 27
AC9
A
534 540Right-handed alpha
Helix 28
AD1
A
541 560Right-handed alpha
Helix 29
AD2
A
564 585Right-handed alpha
Helix 30
AD3
A
587 608Right-handed alpha
Helix 31
AD4
B
103 107Right-handed 310
Helix 32
AD5
C
82 86Right-handed 310
Helix 33
AD6
C
108 112Right-handed 310
Helix 34
AD7
C
128 132Right-handed 310
Helix 35
AD8
E
50 54Right-handed 310
Helix 36
AD9
E
108 112Right-handed 310
Helix 37
AE1
E
128 132Right-handed 310
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There are 10 sheets in PDB entry 9Q6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 24first strand
Strand 2
B
34 41anti-parallel
Strand 3
B
94 100anti-parallel
Strand 4
B
84 89anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
145 146parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
61 68anti-parallel
Strand 3
B
49 55anti-parallel
Strand 4
B
109 115anti-parallel
Strand 5
B
136 137anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
61 68anti-parallel
Strand 3
B
49 55anti-parallel
Strand 4
B
109 115anti-parallel
Strand 5
B
141 142anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 121first strand
Strand 2
B
127 128anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 29first strand
Strand 2
C
40 47anti-parallel
Strand 3
C
99 104anti-parallel
Strand 4
C
89 94anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
139 144parallel
Strand 3
C
113 121anti-parallel
Strand 4
C
54 61anti-parallel
Strand 5
C
67 69anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
139 144parallel
Strand 3
C
113 121anti-parallel
Strand 4
C
134 135anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
27 29first strand
Strand 2
E
39 45anti-parallel
Strand 3
E
99 105anti-parallel
Strand 4
E
90 94anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 35first strand
Strand 2
E
139 144parallel
Strand 3
E
113 120anti-parallel
Strand 4
E
55 61anti-parallel
Strand 5
E
68 69anti-parallel
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