Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q6Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q6Z entry

There are 5 chains in PDB entry 9Q6Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 25	LEU 609
B	HIS 18	GLU 148
C	ALA 22	PRO 146
D	ALA 22	PRO 147
E	ALA 22	LYS 147

There are 40 helices in PDB entry 9Q6Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	38	Right-handed alpha
Helix 2	AA2	A	40	55	Right-handed alpha
Helix 3	AA3	A	59	80	Right-handed alpha
Helix 4	AA4	A	89	100	Right-handed alpha
Helix 5	AA5	A	108	116	Right-handed alpha
Helix 6	AA6	A	118	130	Right-handed alpha
Helix 7	AA7	A	143	154	Right-handed alpha
Helix 8	AA8	A	154	170	Right-handed alpha
Helix 9	AA9	A	174	195	Right-handed alpha
Helix 10	AB1	A	197	247	Right-handed alpha
Helix 11	AB2	A	251	272	Right-handed alpha
Helix 12	AB3	A	273	291	Right-handed alpha
Helix 13	AB4	A	291	296	Right-handed alpha
Helix 14	AB5	A	297	301	Right-handed 310
Helix 15	AB6	A	306	317	Right-handed alpha
Helix 16	AB7	A	329	334	Right-handed alpha
Helix 17	AB8	A	338	346	Right-handed alpha
Helix 18	AB9	A	346	362	Right-handed alpha
Helix 19	AC1	A	366	385	Right-handed alpha
Helix 20	AC2	A	389	395	Right-handed alpha
Helix 21	AC3	A	396	423	Right-handed alpha
Helix 22	AC4	A	425	439	Right-handed alpha
Helix 23	AC5	A	443	463	Right-handed alpha
Helix 24	AC6	A	465	491	Right-handed alpha
Helix 25	AC7	A	494	504	Right-handed alpha
Helix 26	AC8	A	507	515	Right-handed alpha
Helix 27	AC9	A	534	540	Right-handed alpha
Helix 28	AD1	A	541	560	Right-handed alpha
Helix 29	AD2	A	564	585	Right-handed alpha
Helix 30	AD3	A	587	608	Right-handed alpha
Helix 31	AD4	B	103	107	Right-handed 310
Helix 32	AD5	C	82	86	Right-handed 310
Helix 33	AD6	C	108	112	Right-handed 310
Helix 34	AD7	D	49	53	Right-handed 310
Helix 35	AD8	D	109	113	Right-handed 310
Helix 36	AD9	D	129	131	Right-handed 310
Helix 37	AE1	E	50	54	Right-handed 310
Helix 38	AE2	E	82	86	Right-handed 310
Helix 39	AE3	E	108	112	Right-handed 310
Helix 40	AE4	E	128	132	Right-handed 310

There are 13 sheets in PDB entry 9Q6Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	34	41	anti-parallel
Strand 3	B	94	100	anti-parallel
Strand 4	B	84	89	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	141	146	parallel
Strand 3	B	108	115	anti-parallel
Strand 4	B	49	55	anti-parallel
Strand 5	B	61	68	anti-parallel
Strand 6	B	73	75	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	141	146	parallel
Strand 3	B	108	115	anti-parallel
Strand 4	B	136	137	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	127	128	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	29	first strand
Strand 2	C	40	48	anti-parallel
Strand 3	C	99	104	anti-parallel
Strand 4	C	89	94	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	139	144	parallel
Strand 3	C	113	121	anti-parallel
Strand 4	C	54	61	anti-parallel
Strand 5	C	67	73	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	139	144	parallel
Strand 3	C	113	121	anti-parallel
Strand 4	C	134	135	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	41	44	anti-parallel
Strand 3	D	100	105	anti-parallel
Strand 4	D	90	95	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	67	73	anti-parallel
Strand 3	D	55	61	anti-parallel
Strand 4	D	114	121	anti-parallel
Strand 5	D	133	136	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	67	73	anti-parallel
Strand 3	D	55	61	anti-parallel
Strand 4	D	114	121	anti-parallel
Strand 5	D	140	142	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	29	first strand
Strand 2	E	39	45	anti-parallel
Strand 3	E	99	105	anti-parallel
Strand 4	E	89	94	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	139	144	parallel
Strand 3	E	113	119	anti-parallel
Strand 4	E	56	61	anti-parallel
Strand 5	E	68	69	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	74	first strand
Strand 2	E	77	80	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q6Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q6Z