Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q71

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q71 entry

There are 12 chains in PDB entry 9Q71 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 24	THR 95
B	ASN 143	LEU 484
C	GLN 24	THR 95
D	ASN 143	LEU 484
E	GLN 24	THR 95
F	ASN 143	LEU 484
G	GLN 1	THR 115
H	ASP 1	LYS 110
I	GLN 1	SER 118
J	ASP 1	LYS 110
K	GLN 1	VAL 116
L	ASP 1	LYS 110

There are 37 helices in PDB entry 9Q71. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	31	Right-handed alpha
Helix 2	AA2	A	70	95	Right-handed alpha
Helix 3	AA3	B	145	185	Right-handed alpha
Helix 4	AA4	B	185	223	Right-handed alpha
Helix 5	AA5	B	230	238	Right-handed alpha
Helix 6	AA6	B	241	250	Right-handed alpha
Helix 7	AA7	B	252	262	Right-handed alpha
Helix 8	AA8	B	352	360	Right-handed alpha
Helix 9	AA9	B	459	484	Right-handed alpha
Helix 10	AB1	C	26	31	Right-handed alpha
Helix 11	AB2	C	32	34	Right-handed 310
Helix 12	AB3	C	70	95	Right-handed alpha
Helix 13	AB4	D	144	185	Right-handed alpha
Helix 14	AB5	D	185	223	Right-handed alpha
Helix 15	AB6	D	230	238	Right-handed alpha
Helix 16	AB7	D	241	250	Right-handed alpha
Helix 17	AB8	D	253	262	Right-handed alpha
Helix 18	AB9	D	352	361	Right-handed alpha
Helix 19	AC1	D	459	484	Right-handed alpha
Helix 20	AC2	E	26	31	Right-handed alpha
Helix 21	AC3	E	32	34	Right-handed 310
Helix 22	AC4	E	70	94	Right-handed alpha
Helix 23	AC5	F	144	186	Right-handed alpha
Helix 24	AC6	F	186	223	Right-handed alpha
Helix 25	AC7	F	230	238	Right-handed alpha
Helix 26	AC8	F	241	250	Right-handed alpha
Helix 27	AC9	F	253	263	Right-handed alpha
Helix 28	AD1	F	352	361	Right-handed alpha
Helix 29	AD2	F	362	366	Right-handed 310
Helix 30	AD3	F	459	484	Right-handed alpha
Helix 31	AD4	G	62	65	Right-handed 310
Helix 32	AD5	G	101	103	Right-handed 310
Helix 33	AD6	H	83	87	Right-handed 310
Helix 34	AD7	I	87	91	Right-handed 310
Helix 35	AD8	I	101	103	Right-handed 310
Helix 36	AD9	J	83	87	Right-handed 310
Helix 37	AE1	K	101	103	Right-handed 310

There are 36 sheets in PDB entry 9Q71. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	266	273	anti-parallel
Strand 3	B	278	301	anti-parallel
Strand 4	A	35	57	anti-parallel
Strand 5	B	318	322	first strand
Strand 6	B	325	329	anti-parallel
Strand 7	B	348	350	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	335	first strand
Strand 2	B	341	343	anti-parallel
Strand 3	A	35	57	parallel
Strand 4	B	278	301	anti-parallel
Strand 5	F	436	442	first strand

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	F	445	446	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	309	314	anti-parallel
Strand 3	B	367	370	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	382	first strand
Strand 2	B	385	388	anti-parallel
Strand 3	B	413	416	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	403	first strand
Strand 2	B	395	397	anti-parallel
Strand 3	B	422	425	anti-parallel
Strand 4	B	428	431	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	C	36	57	parallel
Strand 3	D	278	300	anti-parallel
Strand 4	D	341	343	first strand
Strand 5	D	334	335	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	228	first strand
Strand 2	D	266	273	anti-parallel
Strand 3	D	278	300	anti-parallel
Strand 4	C	36	57	anti-parallel
Strand 5	D	318	322	first strand
Strand 6	D	325	329	anti-parallel
Strand 7	D	348	349	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	C	61	62	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	306	first strand
Strand 2	D	309	313	anti-parallel
Strand 3	D	368	370	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	382	first strand
Strand 2	D	385	388	anti-parallel
Strand 3	D	413	416	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	403	first strand
Strand 2	D	395	397	anti-parallel
Strand 3	D	422	425	anti-parallel
Strand 4	D	428	431	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	442	first strand
Strand 2	E	36	57	parallel
Strand 3	F	278	300	anti-parallel
Strand 4	F	341	343	first strand
Strand 5	F	334	335	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	227	228	first strand
Strand 2	F	266	273	anti-parallel
Strand 3	F	278	300	anti-parallel
Strand 4	E	36	57	anti-parallel
Strand 5	F	318	322	first strand
Strand 6	F	325	329	anti-parallel
Strand 7	F	348	350	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	446	first strand
Strand 2	E	61	62	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	306	first strand
Strand 2	F	309	314	anti-parallel
Strand 3	F	367	370	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	379	382	first strand
Strand 2	F	385	388	anti-parallel
Strand 3	F	413	416	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	402	403	first strand
Strand 2	F	395	397	anti-parallel
Strand 3	F	422	425	anti-parallel
Strand 4	F	428	431	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	93	99	anti-parallel
Strand 5	G	105	108	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	74	79	anti-parallel
Strand 4	H	66	71	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	105	109	parallel
Strand 3	H	89	94	anti-parallel
Strand 4	H	37	42	anti-parallel
Strand 5	H	49	53	anti-parallel
Strand 6	H	57	58	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	105	109	parallel
Strand 3	H	89	94	anti-parallel
Strand 4	H	100	101	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	112	116	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	52	anti-parallel
Strand 6	I	57	60	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	112	116	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	105	108	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	6	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	74	79	anti-parallel
Strand 4	J	66	71	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	105	109	parallel
Strand 3	J	89	94	anti-parallel
Strand 4	J	37	42	anti-parallel
Strand 5	J	49	53	anti-parallel
Strand 6	J	57	58	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	30	31	first strand
Strand 2	J	34	35	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	11	first strand
Strand 2	K	112	115	parallel
Strand 3	K	93	99	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	59	60	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	11	first strand
Strand 2	K	112	115	parallel
Strand 3	K	93	99	anti-parallel
Strand 4	K	105	108	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	74	79	anti-parallel
Strand 4	L	66	71	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	106	109	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	31	first strand
Strand 2	L	34	35	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	58	first strand
Strand 2	L	49	53	anti-parallel
Strand 3	L	37	42	anti-parallel
Strand 4	L	89	94	anti-parallel
Strand 5	L	100	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q71

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q71