Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Q79 entry

There are 8 chains in PDB entry 9Q79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 8SER 180
C
 GLN 8SER 180
G
 GLN 8SER 181
B
 ALA 75HIS 114
D
 PRO 72HIS 113
H
 SER 76HIS 113
E
 SER 7ILE 179
F
 SER 76LYS 111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9Q79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 58Right-handed alpha
Helix 2
AA2
A
60 64Right-handed 310
Helix 3
AA3
A
80 84Right-handed 310
Helix 4
AA4
A
96 112Right-handed alpha
Helix 5
AA5
A
114 120Right-handed 310
Helix 6
AA6
A
154 166Right-handed alpha
Helix 7
AA7
C
48 58Right-handed alpha
Helix 8
AA8
C
60 64Right-handed 310
Helix 9
AA9
C
80 84Right-handed 310
Helix 10
AB1
C
96 112Right-handed alpha
Helix 11
AB2
C
114 119Right-handed 310
Helix 12
AB3
C
154 166Right-handed alpha
Helix 13
AB4
G
48 57Right-handed alpha
Helix 14
AB5
G
60 64Right-handed 310
Helix 15
AB6
G
80 84Right-handed 310
Helix 16
AB7
G
96 112Right-handed alpha
Helix 17
AB8
G
114 120Right-handed 310
Helix 18
AB9
G
155 166Right-handed alpha
Helix 19
AC1
B
84 89Right-handed alpha
Helix 20
AC2
B
90 94Right-handed 310
Helix 21
AC3
B
99 111Right-handed alpha
Helix 22
AC4
D
84 89Right-handed alpha
Helix 23
AC5
D
90 93Right-handed 310
Helix 24
AC6
D
99 111Right-handed alpha
Helix 25
AC7
H
84 90Right-handed alpha
Helix 26
AC8
H
91 94Right-handed 310
Helix 27
AC9
H
99 110Right-handed alpha
Helix 28
AD1
E
48 58Right-handed alpha
Helix 29
AD2
E
60 64Right-handed 310
Helix 30
AD3
E
80 84Right-handed 310
Helix 31
AD4
E
96 112Right-handed alpha
Helix 32
AD5
E
115 120Right-handed 310
Helix 33
AD6
E
154 166Right-handed alpha
Helix 34
AD7
F
84 91Right-handed alpha
Helix 35
AD8
F
92 94Right-handed 310
Helix 36
AD9
F
99 110Right-handed alpha
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There are 4 sheets in PDB entry 9Q79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 47first strand
Strand 2
A
11 21anti-parallel
Strand 3
A
69 74anti-parallel
Strand 4
A
126 133anti-parallel
Strand 5
A
143 149anti-parallel
Strand 6
A
88 94anti-parallel
Strand 7
A
173 178anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 47first strand
Strand 2
C
11 21anti-parallel
Strand 3
C
69 74anti-parallel
Strand 4
C
126 133anti-parallel
Strand 5
C
143 149anti-parallel
Strand 6
C
88 93anti-parallel
Strand 7
C
173 178anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
40 47first strand
Strand 2
G
11 21anti-parallel
Strand 3
G
69 74anti-parallel
Strand 4
G
126 133anti-parallel
Strand 5
G
143 149anti-parallel
Strand 6
G
88 94anti-parallel
Strand 7
G
173 175anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
40 47first strand
Strand 2
E
11 21anti-parallel
Strand 3
E
69 74anti-parallel
Strand 4
E
126 133anti-parallel
Strand 5
E
143 149anti-parallel
Strand 6
E
88 94anti-parallel
Strand 7
E
173 177anti-parallel
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