Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q7U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Q7U entry

There are 16 chains in PDB entry 9Q7U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 35	VAL 35
A	LYS 37	ARG 134
B	LEU 22	GLY 101
C	ALA 14	LEU 115
D	THR 29	ALA 121
E	GLY 34	VAL 35
E	LYS 37	ARG 134
F	ASP 24	GLY 101
G	ALA 14	ILE 111
H	ARG 30	ALA 121
I	T 2	C 163
J	G 5	A 166
V	ASP 394	PHE 767
Z	PRO 541	PHE 767
K	GLU 9	VAL 912
L	GLU 9	VAL 912

There are 99 helices in PDB entry 9Q7U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	23	27	Right-handed alpha
Helix 6	AA6	B	30	42	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	92	Right-handed alpha
Helix 9	AA9	C	16	22	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	46	73	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	D	34	46	Right-handed alpha
Helix 15	AB6	D	52	81	Right-handed alpha
Helix 16	AB7	D	87	99	Right-handed alpha
Helix 17	AB8	D	100	121	Right-handed alpha
Helix 18	AB9	E	44	56	Right-handed alpha
Helix 19	AC1	E	63	79	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	120	132	Right-handed alpha
Helix 22	AC4	F	25	29	Right-handed 310
Helix 23	AC5	F	30	42	Right-handed alpha
Helix 24	AC6	F	49	76	Right-handed alpha
Helix 25	AC7	F	82	93	Right-handed alpha
Helix 26	AC8	G	16	21	Right-handed alpha
Helix 27	AC9	G	26	37	Right-handed alpha
Helix 28	AD1	G	46	73	Right-handed alpha
Helix 29	AD2	G	79	90	Right-handed alpha
Helix 30	AD3	G	90	97	Right-handed alpha
Helix 31	AD4	H	34	46	Right-handed alpha
Helix 32	AD5	H	52	81	Right-handed alpha
Helix 33	AD6	H	87	99	Right-handed alpha
Helix 34	AD7	H	101	119	Right-handed alpha
Helix 35	AD8	V	396	407	Right-handed alpha
Helix 36	AD9	V	435	445	Right-handed alpha
Helix 37	AE1	V	481	487	Right-handed alpha
Helix 38	AE2	V	491	499	Right-handed alpha
Helix 39	AE3	V	521	532	Right-handed alpha
Helix 40	AE4	V	565	575	Right-handed alpha
Helix 41	AE5	V	589	598	Right-handed alpha
Helix 42	AE6	V	612	620	Right-handed alpha
Helix 43	AE7	V	650	663	Right-handed alpha
Helix 44	AE8	V	683	695	Right-handed alpha
Helix 45	AE9	V	752	767	Right-handed alpha
Helix 46	AF1	Z	565	574	Right-handed alpha
Helix 47	AF2	Z	587	598	Right-handed alpha
Helix 48	AF3	Z	607	611	Right-handed 310
Helix 49	AF4	Z	612	619	Right-handed alpha
Helix 50	AF5	Z	649	663	Right-handed alpha
Helix 51	AF6	Z	683	695	Right-handed alpha
Helix 52	AF7	Z	753	767	Right-handed alpha
Helix 53	AF8	K	38	43	Right-handed alpha
Helix 54	AF9	K	68	70	Right-handed 310
Helix 55	AG1	K	75	80	Right-handed alpha
Helix 56	AG2	K	82	88	Right-handed alpha
Helix 57	AG3	K	88	107	Right-handed alpha
Helix 58	AG4	K	125	138	Right-handed alpha
Helix 59	AG5	K	144	149	Right-handed 310
Helix 60	AG6	K	477	485	Right-handed alpha
Helix 61	AG7	K	514	523	Right-handed alpha
Helix 62	AG8	K	560	566	Right-handed alpha
Helix 63	AG9	K	570	578	Right-handed alpha
Helix 64	AH1	K	600	612	Right-handed alpha
Helix 65	AH2	K	644	654	Right-handed alpha
Helix 66	AH3	K	666	678	Right-handed alpha
Helix 67	AH4	K	691	699	Right-handed alpha
Helix 68	AH5	K	710	714	Right-handed 310
Helix 69	AH6	K	726	729	Right-handed 310
Helix 70	AH7	K	730	742	Right-handed alpha
Helix 71	AH8	K	762	773	Right-handed alpha
Helix 72	AH9	K	783	785	Right-handed 310
Helix 73	AI1	K	815	819	Right-handed 310
Helix 74	AI2	K	860	868	Right-handed alpha
Helix 75	AI3	K	881	891	Right-handed alpha
Helix 76	AI4	K	894	903	Right-handed alpha
Helix 77	AI5	K	904	909	Right-handed 310
Helix 78	AI6	L	38	42	Right-handed 310
Helix 79	AI7	L	68	70	Right-handed 310
Helix 80	AI8	L	82	88	Right-handed alpha
Helix 81	AI9	L	88	107	Right-handed alpha
Helix 82	AJ1	L	125	138	Right-handed alpha
Helix 83	AJ2	L	144	149	Right-handed 310
Helix 84	AJ3	L	477	485	Right-handed alpha
Helix 85	AJ4	L	514	525	Right-handed alpha
Helix 86	AJ5	L	560	567	Right-handed alpha
Helix 87	AJ6	L	570	578	Right-handed alpha
Helix 88	AJ7	L	600	611	Right-handed alpha
Helix 89	AJ8	L	644	653	Right-handed alpha
Helix 90	AJ9	L	666	678	Right-handed alpha
Helix 91	AK1	L	691	698	Right-handed alpha
Helix 92	AK2	L	725	742	Right-handed alpha
Helix 93	AK3	L	762	774	Right-handed alpha
Helix 94	AK4	L	782	786	Right-handed alpha
Helix 95	AK5	L	814	819	Right-handed alpha
Helix 96	AK6	L	860	868	Right-handed alpha
Helix 97	AK7	L	881	892	Right-handed alpha
Helix 98	AK8	L	894	903	Right-handed alpha
Helix 99	AK9	L	904	909	Right-handed 310

There are 27 sheets in PDB entry 9Q7U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	426	427	first strand
Strand 2	V	432	433	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	467	469	first strand
Strand 2	V	478	480	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	512	513	first strand
Strand 2	V	516	517	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	578	580	first strand
Strand 2	V	555	560	parallel
Strand 3	V	583	584	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	578	580	first strand
Strand 2	V	555	560	parallel
Strand 3	V	624	627	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	675	679	first strand
Strand 2	V	713	717	anti-parallel
Strand 3	V	699	701	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	582	584	first strand
Strand 2	Z	557	560	parallel
Strand 3	Z	624	626	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	675	679	first strand
Strand 2	Z	713	717	anti-parallel
Strand 3	Z	700	701	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	22	24	first strand
Strand 2	K	32	34	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	37	first strand
Strand 2	K	51	55	anti-parallel
Strand 3	K	62	66	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	504	505	first strand
Strand 2	K	512	513	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	546	547	first strand
Strand 2	K	558	559	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	591	592	first strand
Strand 2	K	595	596	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	634	637	first strand
Strand 2	K	657	661	parallel
Strand 3	K	681	682	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	754	758	first strand
Strand 2	K	791	796	anti-parallel
Strand 3	K	779	781	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	823	825	first strand
Strand 2	K	850	852	anti-parallel
Strand 3	K	855	857	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	62	66	first strand
Strand 2	L	51	56	anti-parallel
Strand 3	L	32	36	anti-parallel
Strand 4	L	22	24	anti-parallel
Strand 5	L	71	72	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	546	548	first strand
Strand 2	L	557	559	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	591	592	first strand
Strand 2	L	595	596	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	657	660	first strand
Strand 2	L	634	638	parallel
Strand 3	L	703	705	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	754	758	first strand
Strand 2	L	791	796	anti-parallel
Strand 3	L	778	781	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	823	825	first strand
Strand 2	L	850	852	anti-parallel
Strand 3	L	856	857	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Q7U

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Q7U